Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03170 ATGTATGTGGAAATGAAACTAGTGTCTATTCTATTGTTATTGTTGGCTACCGTTTATTCTTTTGCACTTCCTCAGCTTGATTTACAAGAAGATGCGCTATATGCATTGAAGTTATCTCTGAATGCTTCACCCAGCCAGCTTACAAACTGGAACAAAAATCAAGTAAACCCTTGTACTTGGTCCGGTGTTTACTGCGACCAGAATACCAATGTTGTTCAAGTTTCACTAGCTTTTATGGGATTGACTGGAACCTTGACACCGAGAATAGGAGCTCTAAAAAGTCTTACAACTCTTTCTTTACAAGGGAATCGCATCACTGGTGAGATACCAAAAGAATTTGGAAATCTTACCAGCTTAGTGAGATTGGATCTGGAAAACAACATGTTAACCGGTGAAATACCGTCTTCCCTTGGTAATCTTAAAAGGCTTCAATTCTTGACATTGAGTCAGAACAATCTCAAAGGGACTATTCCTGAATCACTTAGCAGTGTCCCAAACTTGATCAATCTTCTGTTAGATTCAAATGATCTTAGAGGACAGATTCCAGAGCAGTTATTCAATGTTCCTAAGTACAATTTCACTGGAAATAAGTTGAATTGTGGCGTGGGTTATCAGCACCTTTGCATATCTGATAGTGCAAATGAAGGTTCTTCACACAAATCAAAAATAGGCCTCATAGTTGGAACAGTTATAGGTTTAATTCTTCTTCTTTTTCTTGGTAGCGTTTTGTTTTTCTGGTGCAAAGGGTACAAGCGTGAAGTTTTTGAAGATGTTCCAGGTGAAGTTGATCGGCGAATCACATTAGGTCAAATAAAAAAGTTTTCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAACGAGAAAAATGTATTAGGACAGGGAGGCTTTGGAAAGGTTTACAAAGGTGATTTAGCAGATGGGACAAAAATTGCAGTAAAACGGCTAACTGATTATGAAAGTCCCGGGGGTGATCAAGCTTTCCAGCGGGAGGTTGAGATGATAAGCGTAGCTGTCCATAGGAACCTTTTACGCCTCATTGGATTTTGTTCTACTCCAACTGAACGCCTCTTAGTTTATCCTTTCATGGAAAACTTAAGTGTTGCTTCTCGACTACGAGAGCTCAAACCTGGGGAATCCGTTTTGAATTGGGCTACAAGAAAAGGAGTGGCTCTTGGAACGGCCCGAGGCCTTGAATATCTTCATGAACAATGTGATCCTAAAATTATTCATAGAGATGTAAAGGCAGCAAACATATTATTAGATGGAGATTTTGAAGCAGTTGTCGGGGACTTTGGTTTGGCAAAACTGGTTGATGTTCAAAGGACTAACGTGACAACTCAAATTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCTACAGGAAAGTCTTCAGAAAAGACAGATGTTTTTAGTTACGGGGTTATGCTTTTGGAGCTTGTAACAGGTCAACGTGCGATTGACTTTTCACGTTTGGAAGATGAAGATGATGTGTTATTGCTTGACCATGTGAAGAAGCTACAGCGGGAGAAAAAACTAGATGCTATTGTTGACAGCAACCTTAAAAAAGAGTACAACATAGAAGAGGTTGAAATGATAGTACAGGTTGCATTACTGTGCGCACAAGCTATGCCAGAGGAACGTCCGGCAATGTCAGAGGTAGTAAGAATGTTGGAGGGAGAAGGGCTGACTGAAAGGTGGGAAGAATGGCAGCATGTGGAGGTTACTCGGAGGCAAGACACAGAGAGACTGCAAAGAAGATTTGCATGGGGAGAAGATTCGATTCATAACCAAGAGGCCATCGAGTTGTCGGGTGGAAGATGA 1830 0.4093 MYVEMKLVSILLLLLATVYSFALPQLDLQEDALYALKLSLNASPSQLTNWNKNQVNPCTWSGVYCDQNTNVVQVSLAFMGLTGTLTPRIGALKSLTTLSLQGNRITGEIPKEFGNLTSLVRLDLENNMLTGEIPSSLGNLKRLQFLTLSQNNLKGTIPESLSSVPNLINLLLDSNDLRGQIPEQLFNVPKYNFTGNKLNCGVGYQHLCISDSANEGSSHKSKIGLIVGTVIGLILLLFLGSVLFFWCKGYKREVFEDVPGEVDRRITLGQIKKFSWRELQIATDNFNEKNVLGQGGFGKVYKGDLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCSTPTERLLVYPFMENLSVASRLRELKPGESVLNWATRKGVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVQRTNVTTQIRGTMGHIAPEYLSTGKSSEKTDVFSYGVMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDAIVDSNLKKEYNIEEVEMIVQVALLCAQAMPEERPAMSEVVRMLEGEGLTERWEEWQHVEVTRRQDTERLQRRFAWGEDSIHNQEAIELSGGR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03170 609 Pfam Leucine Rich repeats (2 copies) 93 133 IPR025875 -
Vivi3g03170 609 Pfam Protein kinase domain 286 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03170 609 SUPERFAMILY L domain-like 30 198 - -
Vivi3g03170 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 571 - -
Vivi3g03170 609 FunFam Putative LRR receptor-like serine/threonine-protein kinase 26 210 - -
Vivi3g03170 609 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
Vivi3g03170 609 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Vivi3g03170 609 Gene3D Transferase(Phosphotransferase) domain 1 363 580 - -
Vivi3g03170 609 SUPERFAMILY Protein kinase-like (PK-like) 264 561 IPR011009 -
Vivi3g03170 609 FunFam Somatic embryogenesis receptor-like kinase 1 363 580 - -
Vivi3g03170 609 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Vivi3g03170 609 Gene3D Phosphorylase Kinase; domain 1 255 362 - -
Vivi3g03170 609 SMART serkin_6 286 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03170 609 ProSiteProfiles Protein kinase domain profile. 286 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03170 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Vivi3g03170 609 FunFam Somatic embryogenesis receptor kinase 1 255 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03170 Vivi-Chr3 53930763 53935175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03170 8 609 Receptor kinase-like Gene Family AT5G10290 71.947 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi3g03170 Pkinase 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03170 - - gmx:100786654 962.985