Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03168 ATGTATGTGGAAATGAAACTAGTGTCTATTCTATTGTTATTGTTGGCTACCGTTTATTCTTTTGCACTTCCTCAGCTTGATTTACAAGAAGATGCGCTATATGCATTGAAGTTATCTCTGAATGCTTCACCCAGCCAGCTTACAAACTGGAACAAAAATCAAGTAAACCCTTGTACTTGGTCCGGTGTTTACTGCGACCAGAATACCAATGTTGTTCAAGTTTCACTAGCTTTTATGGGATTGACTGGAACCTTGACACCGAGAATAGGAGCTCTAAAAAGTCTTACAACTCTTTCTTTACAAGGGAATCGCATCACTGGTGAGATACCAAAAGAATTTGGAAATCTTACCAGCTTAGTGAGATTGGATCTGGAAAACAACATGTTAACCGGTGAAATACCGTCTTCCCTTGGTAATCTTAAAAGGCTTCAATTCTTGACATTGAGTCAGAACAATCTCAAAGGGACTATTCCTGAATCACTTAGCAGTGTCCCAAACTTGATCAATCTTTTCACTGGAAATAAGTTGAATTGTGGCGTGGGTTATCAGCACCTTTGCATATCTGATAGTGCAAATGAAGGTTCTTCACACAAATCAAAAATAGGCCTCATAGTTGGAACAGTTATAGGTTTAATTCTTCTTCTTTTTCTTGGTAGCGTTTTGTTTTTCTGGTGCAAAGGGTACAAGCGTGAAGTTTTTGAAGATGTTCCAGGTGAAGTTGATCGGCGAATCACATTAGGTCAAATAAAAAAGTTTTCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAACGAGAAAAATGTATTAGGACAGGGAGGCTTTGGAAAGGTTTACAAAGGTGATTTAGCAGATGGGACAAAAATTGCAGTAAAACGGCTAACTGATTATGAAAGTCCCGGGGGTGATCAAGCTTTCCAGCGGGAGGTTGAGATGATAAGCGTAGCTGTCCATAGGAACCTTTTACGCCTCATTGGATTTTGTTCTACTCCAACTGAACGCCTCTTAGTTTATCCTTTCATGGAAAACTTAAGTGTTGCTTCTCGACTACGAGAGCTCAAACCTGGGGAATCCGTTTTGAATTGGGCTACAAGAAAAGGAGTGGCTCTTGGAACGGCCCGAGGCCTTGAATATCTTCATGAACAATGTGATCCTAAAATTATTCATAGAGATGTAAAGGCAGCAAACATATTATTAGATGGAGATTTTGAAGCAGTTGTCGGGGACTTTGGTTTGGCAAAACTGGTTGATGTTCAAAGGACTAACGTGACAACTCAAATTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCTACAGGAAAGTCTTCAGAAAAGACAGATGTTTTTAGTTACGGGGTTATGCTTTTGGAGCTTGTAACAGGTCAACGTGCGATTGACTTTTCACGTTTGGAAGATGAAGATGATGTGTTATTGCTTGACCATGTGAAGAAGCTACAGCGGGAGAAAAAACTAGATGCTATTGTTGACAGCAACCTTAAAAAAGAGTACAACATAGAAGAGGTTGAAATGATAGTACAGGTTGCATTACTGTGCGCACAAGCTATGCCAGAGGAACGTCCGGCAATGTCAGAGGTAGTAAGAATGTTGGAGGGAGAAGGGCTGACTGAAAGGTGGGAAGAATGGCAGCATGTGGAGGTTACTCGGAGGCAAGACACAGAGAGACTGCAAAGAAGATTTGCATGGGGAGAAGATTCGATTCATAACCAAGAGGCCATCGAGTTGTCGGGTGGAAGATGA 1764 0.4116 MYVEMKLVSILLLLLATVYSFALPQLDLQEDALYALKLSLNASPSQLTNWNKNQVNPCTWSGVYCDQNTNVVQVSLAFMGLTGTLTPRIGALKSLTTLSLQGNRITGEIPKEFGNLTSLVRLDLENNMLTGEIPSSLGNLKRLQFLTLSQNNLKGTIPESLSSVPNLINLFTGNKLNCGVGYQHLCISDSANEGSSHKSKIGLIVGTVIGLILLLFLGSVLFFWCKGYKREVFEDVPGEVDRRITLGQIKKFSWRELQIATDNFNEKNVLGQGGFGKVYKGDLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCSTPTERLLVYPFMENLSVASRLRELKPGESVLNWATRKGVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVQRTNVTTQIRGTMGHIAPEYLSTGKSSEKTDVFSYGVMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDAIVDSNLKKEYNIEEVEMIVQVALLCAQAMPEERPAMSEVVRMLEGEGLTERWEEWQHVEVTRRQDTERLQRRFAWGEDSIHNQEAIELSGGR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03168 587 FunFam Somatic embryogenesis receptor kinase 1 233 340 - -
Vivi3g03168 587 Gene3D Ribonuclease Inhibitor 27 192 IPR032675 -
Vivi3g03168 587 ProSiteProfiles Protein kinase domain profile. 264 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03168 587 Gene3D Phosphorylase Kinase; domain 1 233 340 - -
Vivi3g03168 587 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Vivi3g03168 587 FunFam Somatic embryogenesis receptor-like kinase 1 341 558 - -
Vivi3g03168 587 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 26 179 - -
Vivi3g03168 587 SUPERFAMILY Protein kinase-like (PK-like) 242 539 IPR011009 -
Vivi3g03168 587 Gene3D Transferase(Phosphotransferase) domain 1 341 558 - -
Vivi3g03168 587 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 549 - -
Vivi3g03168 587 SUPERFAMILY L domain-like 30 186 - -
Vivi3g03168 587 SMART serkin_6 264 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03168 587 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Vivi3g03168 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Vivi3g03168 587 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Vivi3g03168 587 Pfam Protein kinase domain 264 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03168 Vivi-Chr3 53930763 53935328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03168 8 587 Receptor kinase-like Gene Family AT5G10290 68.812 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi3g03168 Pkinase 4.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03168 - - gmx:100786654 919.072