Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03167 ATGTTTAATCCGAACCTAGATTCCCATCACCCGCACCAAGATCCAAATAGCAACTCCGACCCTCAGGTTCCGCTTCGGAACCTATCCCTGGTTCAGACCAGAATCGATTCTCTACGAACATTTCTCTCCCAATCCATCAACACCAACACTCCATTCACCAACGATCAAATAACCGTCGTCTCCAACCAGATCGCCTCCGCCATCAACAACACCATAGTCAACGCCGCCGCACTCGTCTCTTACTCTCAAAACCTCACCGTTCCCGCCGCCCCCGTCCTCCCACCGACGAATCTCAGCCTCAGACCAGAACCACCTGACAACAACTACCTCACCGTGGATGACTCAGACGAAGATCACGAAATCGTGGAGCTCGACGCCGTGGAATTACTCGCGGAGCATCTCCATTTCTGCGAGATTTGCGGGAAAGGCTTCAAGCGCGACGCGAATCTCCGGATGCACATGCGAGCGCACGGGAACAGATTCAAGACGCCGGAAGCTTTAGCGAAGCCTTTAGACGACAGTGCACGCCGCGGTTCAACGCGGTTCTCGTGTCCGTTTGAAGGATGCAACAGAAACAAGAAGCATAGAAAATTCAAGGCGTTGAAATCGGTGATATGTGTTAAGAATCATTTCAAACGGAGTCATTGTCCGAAGATGTATTCGTGTGATCGGTGTCATAAGAAGAAGTATTCGGTGCTTTCGGATTTGAAGAGCCATATGAGACAGTGTGGTGGAGAGTGTAGGTGGAAGTGTTCATGTGGGACCACGTTTTCTAGGAAGGATAAGTTGTTTGGACATATTGGTCTGTTTGAGGGTCACATGCCTGCTGTTGTTTTGGAAAATGAGGAGGAGAAAGGGAAACAAGTTGTGGTTGAGGAGAGTGAAGATCCTATGGATATGGATGAAGAGTTCTTTGATGATTTTGGGTTTATTGATGACTATTGTTTGAGGGAAGTTTTGGGGTTTTCTGATAGTTAG 978 0.4857 MFNPNLDSHHPHQDPNSNSDPQVPLRNLSLVQTRIDSLRTFLSQSINTNTPFTNDQITVVSNQIASAINNTIVNAAALVSYSQNLTVPAAPVLPPTNLSLRPEPPDNNYLTVDDSDEDHEIVELDAVELLAEHLHFCEICGKGFKRDANLRMHMRAHGNRFKTPEALAKPLDDSARRGSTRFSCPFEGCNRNKKHRKFKALKSVICVKNHFKRSHCPKMYSCDRCHKKKYSVLSDLKSHMRQCGGECRWKCSCGTTFSRKDKLFGHIGLFEGHMPAVVLENEEEKGKQVVVEESEDPMDMDEEFFDDFGFIDDYCLREVLGFSDS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03167 325 SUPERFAMILY beta-beta-alpha zinc fingers 132 158 IPR036236 -
Vivi3g03167 325 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Vivi3g03167 325 Pfam Zinc-finger of C2H2 type 136 155 - -
Vivi3g03167 325 FunFam Zinc finger protein 574 135 159 - -
Vivi3g03167 325 SMART c2h2final6 135 157 IPR013087 -
Vivi3g03167 325 SMART c2h2final6 220 241 IPR013087 -
Vivi3g03167 325 SMART c2h2final6 182 215 IPR013087 -
Vivi3g03167 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 162 IPR013087 -
Vivi3g03167 325 Gene3D Classic Zinc Finger 135 158 - -
Vivi3g03167 325 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 114 293 IPR044300 GO:0010044|GO:0010447
Vivi3g03167 325 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03167 Vivi-Chr3 53881913 53883391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03167 119 280 C2H2 Transcription Factor Family AT1G34370 61.446 2.96e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g03167 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03167 - - cam:101491258 452.595