Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03148 ATGGTTGAAGATCAATTTCCTATTGGAATGCGTGTTCTGGTTGTTGAAGATGACTTAATATGTCTCAAGAATTTGGAGAGACTTCTCCAAGAGTGTCAATACAATGTAACCATTGCTCAGAGTGGAATAACTGCGTTGAACATGTTGAGCGAAAACAAAAACAATTTTGACATGTTAATGACTAATGTTCAAATCCCAGACATTGATGGATTCATGCTGCTCGAGCTTGTTGGAATGCACCTACCTGTAATATTGTTTTCTTCGAATGATGATCCAAGGATGGTGATGAGAGGAGTTTTACATGGTGCTTGTGATTATCTTGTGAAACCTATTAGAATGGAAAAACTACAGCTCATTTGGCAACATGTAATCAGAAAAAAAGCTGTGCCAAGAAAGATTCTTCATATAATGAATGTTGAAAATCTTACAAACCAGAATGTGGCCAGCCATCTCCAGAAATATAGACTCTACTTGAAAAGAATTAGCAGTGTGGAAAACCAACAAACTAATATGGTGACAGCCATTGGTAGAAGTTCAGATACATCCTATTCAAGAATAAGTTCTCTTAGTGAAGTTGGAGATTATTTGCATGCTTTGAATGGCTCTACAGAGATTAATAGGCATAAAAATCCATTGATGATGGAATCAAAGAAGCTAGTTGAAACAAACTCTAATCTTCAAATAAGCTATGCAGTTCCTATGAGTGTTGTTGAATCTGGAGGAAACTTAGATTACAATTATTGGGATTCATTAATAACTAATGCTATATACAAATAG 777 0.3526 MVEDQFPIGMRVLVVEDDLICLKNLERLLQECQYNVTIAQSGITALNMLSENKNNFDMLMTNVQIPDIDGFMLLELVGMHLPVILFSSNDDPRMVMRGVLHGACDYLVKPIRMEKLQLIWQHVIRKKAVPRKILHIMNVENLTNQNVASHLQKYRLYLKRISSVENQQTNMVTAIGRSSDTSYSRISSLSEVGDYLHALNGSTEINRHKNPLMMESKKLVETNSNLQISYAVPMSVVESGGNLDYNYWDSLITNAIYK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03148 258 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 179 IPR045279 GO:0009736
Vivi3g03148 258 NCBIfam myb-like DNA-binding domain, SHAQKYF class 126 156 IPR006447 GO:0003677
Vivi3g03148 258 ProSiteProfiles Response regulatory domain profile. 11 124 IPR001789 GO:0000160
Vivi3g03148 258 Gene3D - 8 111 - -
Vivi3g03148 258 Gene3D - 112 162 - -
Vivi3g03148 258 SMART REC_2 10 120 IPR001789 GO:0000160
Vivi3g03148 258 SUPERFAMILY CheY-like 9 169 IPR011006 -
Vivi3g03148 258 CDD REC_typeB_ARR-like 12 124 - -
Vivi3g03148 258 Pfam Response regulator receiver domain 12 117 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03148 Vivi-Chr3 53648845 53650166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03148 2 125 Response Regulator Gene Family AT4G31920 60.317 9.64e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g03148 Response_reg 5.1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03148 - K14491 vvo:131658062 509.605