Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03127 ATGGCAACCGCGATGACTTGGAGATTTACTGCAAATAATGGCACCAGCCTTACTGCTAATGAGGAAAGAAATGGCGATGGCAAGGCTCAAGATTCAGAGGCTCCAACTTCCCATTCTGTTCAGAAAATGGGATTGAGAGAACGTAGCAGCAGCGGCATGGAGGATGCAGATGGGACATTAGCAAGTATTGCTCAATGCATTGAGCAGCTACGTCGGAGCTCATCTTATATGCAAGAGAAAGAGTATTCCTTGAAGAAGTTATTGGAGCTTATTGATATGCGTGAAAATGCTTTTAGTGCAGTTGGATCTCATTCTCAGGCAGTTCCGGTGCTTGTTTCCCTTCTCCGGTCAGGTTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAGGAAAATGAGTTAAGGGTGAAAGTTTTGCTTGGAGGATGCATTCCTCCTTTGCTCAGTCTACTGAAGTCCAGTTCTGAAGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTCGCTGTCTCCCAAGGTGATGCCAAAGATCACGTAGGATCAAAAATCTTTTCAACTGAAGGAGTTGTTCCAGTGCTCTGGGAACAGCTGCAAAAGGGCCTAAAGGGTGGAAGTGTAGTAGATAGTTTATTGACTGGAGCATTGAAAAATCTCTACAGTGGTACTGAGAAATTCTGGAATGCAACAATACAGTCTGGAGGAGTGGACATATTACTGAAGTTACTGACAACAGGACAGTCTAGCACTTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAAGATGCATCTTTTTGCTCAAAGCTATTGGCAGCAGATGCAACAAAACAGCTCCTCAAACTTTTAGGCCCTGGTAATGACGCCCCAGTTAGGGCTGAAGCAGCTGGTGCTATTAAATCTCTATCTGCCCAGTGCCAAGATGCAAGGAAAGAGATAGCCAATTGTAATGGCATTCCCGCTTTGATTAATGCAACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCAATACAGGAGAATGCTATGAGTGCTCTTGCAAACATCTCTGGTGGGTTGTCTTATGTCATCTCCAGCCTTAGTAAAAGCCTTGAATCATGCTCCTCACCTACCCAAACTGCCGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATACGATGACAAGGCAGAGTATACTAAAGCATCAGATCCTTTGGCAGTTGAACAGACATTACTCGAGCAATTTAAACCCCGTTCTCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCTCTTGCTAGTTTGTATGGAAATCCTGTACTATCACTTAAACTTGCAAATTCTGATGCAAAACGTTTACTTGTTGGTTTGATAACAATGGCGGCTAAAGAAGTGCAAGATGAGCTTCTAAAAGCTCTCTTGACACTGTGCAATAGTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCAATTGATATCACTTTTAGGGCTTTCATCAGAACAGCAACAAGAATGTGCTGTTGCCCTGCTCTGTCTTTTGTCTGATGAAAATGTTGAAAGTAAGTGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGTCGGGATCTGCCAAAGCAAAGGAAGACTCAGCAACAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCCTGTGTTGAAAGCGCTGATGCAGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCTAAGACCTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTCACAGCATTATTGACTAGTGACCTACCTGAGTCCAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTTCTCTTAGTGACCTTCTACGTGATGGCAGTGCTGCGAGTGATGCGATCAATACGATGATAAAATTATTAAGCTCCACAAAGGAAGAAACTCAGGCAAAGTCAGCATCAGCTTTGTCGGGAATTTTTGAAACAAGGAAAGATGTGCGCGAAAGCAACATTGCTGTGAAAACTCTTTGGTCAGCCATGAAGTTGCTTAATGTTGAATCTAGAAGTATCTTAGTGGAGTCCTCACGTTGCCTAGCTGCTATATTTCTTTCCATTAAAGAGAATAGGGAGGTAGCTGCTAATGCTAGAGATGCATTATTCTCTCTAGTTGCATTAGCTAGCTCTTCAGTTTTGGAAGTAGCGGAGCTGGCAACATGTGCTGTGGCTAATCTTTTATTGGATAGTGAAATTGTAGAGAAAGCTATTGTGGAGGAAGTTATTTTTCCCGCTACCAGAGTATTGCGTGAAGGCACAAGATCTGGAAAAATACATGCAGCAAGAGCAATTTCTCGCCTTTTGCATTCTAGGCAAGTTGATTATGCTGTAAATGATTGTGTGAACCGTGCTGGTACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTATTAATGAACCTGTTGCGACAACAGAGGCTCTAGAAGCACTTGCCATTCTGTCCAGGTTGAAAGAGACCTCTGGACTTAGTAAACCTGCTTGGATGGTTTTGGCTGAATTCCCTGAAAGCATCAGCCCAATAGTTCTGTCAATTGCTGGTTCAACACCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTCTGTGTTAGGAGAGATTGTGGCTACTGCATCTGGATGTATATCTTCAATAGCTACGAGAATAATCAATTCCAGTTCTACAAATGTGAAGGTCAAAATTGGGGGAGCTGCAATTCTTATTTGTGCTGCTAAAGAAAATCACCAGAGGCTGGTGGAGGATCTAAATTTATCAAACTTGTGTTCTAATCTTGTACAGGCGCTCGTCGATATGTTTATTTCTTCACAGGCTACTTTGGTTAATCAGGACAATGACAAGAAGGAAGTCATCAGCATATGCAGGCATACAAAAGATGTCAGTGATGGTAAATCCCCTAACTGCACCACCATTATATCTGGTGCCAATGTAGCTATATGGTTACTGTCTGTTCTTGCTAGCCATGACGAAAAAGCTAGAATTGCAATAATGGAGGCTGGAGCGATTGAGATTCTCACTGACAGGATTGAAAATTTCCCCTCACAGTACAGTCAGATTGACTATAAAGAAGACAGCAGCATGTGGAGTTGTGCTTTGTTGTTGGCAATATTATTTCAAGACAGGGATATCATACGAGCACATGCAACCATGAAATCTATACCAACCCTTGTCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCTATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGCACACTTTTATCTGTTGCTAATTCTGGGGCGCCGAGTGGACTTATCTCCTTGCTTGGTTGTGCTGATGATGATATACAGGATCTTCTGGAATTGTCAAATGAATTTTCATTGGTGCCTTATCCTGATCAAGTTGCTCTCGAGAGGTTGTTTAGAGTTGATGACATTAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTACTCAAACCAATTCCAGATCGCCCAGGCGCACCATTTTTGGCACTTGGGATTATGACTCAGCTTGCTACAGATTGTCCATCAAATAAGATTGCAATGGCAGAGTCGGGGGCCATAGAGGCACTTACTAAGTATCTTTCACTGGGTCCACAAGATGCAATTGAAGAAGCTGCCACAGATGTGTTGGGAATTTTGTTTAGTAGTGCTGAGATAAGGAAACACGAGTCTGCATTTGGTGCTGTTAACCAACTTGTAGCTGTGTTACGTTTAGGCGGAAGAGCTGCAAGGTATAGTGCTGCTAAAGCATTGGCAAGTTTGTTCTCAGTTGACAACATTAGAGATGCAGAGAATGCCCGGCACGCTATTAAACCCTTGGTGGAGATGCTTAATACTGGCTCAGAAAGAGAGCAACATGCTGCAATTTGTGCGTTAGTCAAATTACTGAGTGAAAATCCTTCAAGAGCACTTGTTATTGCTGATATTGAGAAGAATGCCATTGATGTTCTTTGCAGAATTCTTTCATTAGATTGTCCAATGGATTTCAAAGGGGATGCTGCTGAACTATGTTGTGTTCTCTTTGCAAATACAAAGATTCGATCCACAGTAGCAGCTGCACGGTGTGTTGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTAGTCCTGCTCATGATTCAGTCGTCCGGGCATTGGATAGGCTTGTTGGTAATGAGACATTGGCTGAACTAGTTGTTGCACATGGTGCAGTTATTCCTCTCGTTGGCCTACTTTTTGGTAGGAATTTTGTACTTCATGAGGCCGTTTCCAGAGCTCTGGTCAAATTAGGGAAAGATCGACCTAATTGTAAAATTGAAATGGTGAAAGCTGGAGTCATTGAAAGTATACTTGACATCCTTCCTGAAGCACCTGATTATCTCTGTGCAGCTTTTACTGAATTGTTACGTATATTGACCAATAATGCTACCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCCCTGTTCTTTTTGCTAACAAGGCAAGAATTTGGGTCTGACGGTCAACACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACACCCACAGTGCCGTGCTGATTACACATTAACTTCTCACCATGCTATAGAACCACTCATTCCCTTGCTCGATTCTCAAAAAGCAGAAGTGCAACAGTTGGTTGCTGAGCTTCTCTCGCATCTACTTTTAGAAGAACACCTTCAGAAGGACCCAGTGACACAGCAAGTAATTGGCCCTCTTGTGCGAGTTCTTGGTTCTGGCATACAAATATTGCAGCAAAGAGCTTTAAAGGCCCTTGTCAGTATTGCAATTGTATGGCCAAATGAAATTGCAAAAGAGGGTGGAGTTATGGAAATTTCTAAAGTGATATTGCAAGCTGACCCTTCCATTCCTCATACATTATGGGAGTCTGCGGCCTCTGTTTTAGCAACTATCCTGCAATTTTGTTCTGAGTTCTACTTGGAAATTCCTGTTGCTGTTTTGGTAAGGTTGCTTCAATCTGGATCAGAGACCACGGTTAGTGGTGCATTAAGTGCTCTTCTTGTATTGGAAAGTGATGATGGAACTAGCGCAGTCGCAGAGGCAATGGCTGAAACCGGTGCCGTAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAGGACACAGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATTAGAGAAACAAAGGTTACTAAATCAGCCATCTTACCGTTATCCCAGTACCTCTTGGATCCACAAACTCAATTACAGCAAGCAAGGTTATTAGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAGCTGATGCAGTCGCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTTGCCATATGCGCTCTGCAAAACCTTGTGATGCACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCCGGTGGGGTTCAGGTTATACTCGATCTAATTGGTTCAAGTGATCCTGAAACATCTGTTCAAGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCGATAACTGCTGCTATTGAAAAGGATTTATGGGCTACTGGAACTGTGAACGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCGCGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCACATCTGGTTTCATCCTTAAAGACAGGTTCAGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTCAGGCAAGCTTGGTCAGCATGCCCAGCCGAAGTTTCTAGAGCTCAGTCCATAGCAGCCGCAGATGCTATTCCTTTGTTACAGTTTTTAATCCAGTCTGGCCCACCTCGGTTTCAAGAGAAGGCAGAATTTCTATTGCAGTGTTTACCGGGGACATTGGTGGTGATTATCAAGAGCGGTAATAATATGAAGCAGTCTGTTGGAAACGCGAGTGTATACTGTAAGCTTACACTTGGAAACACTCCTCCACAGCAAACCAAGGTGGTTTCAACTGGCCCAAATCCAGAGTGGGATGAGAGTTTCTCATGGTCCTTTGAAAGTCCTCCCAAAGGCCAGAAGCTTCATATTTCTTGCAAAAACAAAAGTAAAATGGGAAAGAGCTCATTTGGGAAAGTGACGATCCAGATTGACCGCGTGGTGATGCTGGGGGCAGTATCTGGAGAATACACTCTGTTGCCTGAAAGTAAAAGTGGCCCCTCAAGAAACTTAGAAATAGAATTTCAATGGTCCAACAAGTGA 6465 0.4294 MATAMTWRFTANNGTSLTANEERNGDGKAQDSEAPTSHSVQKMGLRERSSSGMEDADGTLASIAQCIEQLRRSSSYMQEKEYSLKKLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSEEGQVAAAKTIFAVSQGDAKDHVGSKIFSTEGVVPVLWEQLQKGLKGGSVVDSLLTGALKNLYSGTEKFWNATIQSGGVDILLKLLTTGQSSTLANVCFLLACMMMEDASFCSKLLAADATKQLLKLLGPGNDAPVRAEAAGAIKSLSAQCQDARKEIANCNGIPALINATIAPSKEFMQGEYAQAIQENAMSALANISGGLSYVISSLSKSLESCSSPTQTADTLGALASALMIYDDKAEYTKASDPLAVEQTLLEQFKPRSPFLVQERTIEALASLYGNPVLSLKLANSDAKRLLVGLITMAAKEVQDELLKALLTLCNSECSLWRALQGREGVQQLISLLGLSSEQQQECAVALLCLLSDENVESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLRDGSAASDAINTMIKLLSSTKEETQAKSASALSGIFETRKDVRESNIAVKTLWSAMKLLNVESRSILVESSRCLAAIFLSIKENREVAANARDALFSLVALASSSVLEVAELATCAVANLLLDSEIVEKAIVEEVIFPATRVLREGTRSGKIHAARAISRLLHSRQVDYAVNDCVNRAGTVLALVSFLDSAINEPVATTEALEALAILSRLKETSGLSKPAWMVLAEFPESISPIVLSIAGSTPVLQDKAIEILSRLCKDQPSVLGEIVATASGCISSIATRIINSSSTNVKVKIGGAAILICAAKENHQRLVEDLNLSNLCSNLVQALVDMFISSQATLVNQDNDKKEVISICRHTKDVSDGKSPNCTTIISGANVAIWLLSVLASHDEKARIAIMEAGAIEILTDRIENFPSQYSQIDYKEDSSMWSCALLLAILFQDRDIIRAHATMKSIPTLVNLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAPSGLISLLGCADDDIQDLLELSNEFSLVPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGIMTQLATDCPSNKIAMAESGAIEALTKYLSLGPQDAIEEAATDVLGILFSSAEIRKHESAFGAVNQLVAVLRLGGRAARYSAAKALASLFSVDNIRDAENARHAIKPLVEMLNTGSEREQHAAICALVKLLSENPSRALVIADIEKNAIDVLCRILSLDCPMDFKGDAAELCCVLFANTKIRSTVAAARCVEPLVSLLVSEFSPAHDSVVRALDRLVGNETLAELVVAHGAVIPLVGLLFGRNFVLHEAVSRALVKLGKDRPNCKIEMVKAGVIESILDILPEAPDYLCAAFTELLRILTNNATIAKGPSAAKVVEPLFFLLTRQEFGSDGQHSALQVLVNILEHPQCRADYTLTSHHAIEPLIPLLDSQKAEVQQLVAELLSHLLLEEHLQKDPVTQQVIGPLVRVLGSGIQILQQRALKALVSIAIVWPNEIAKEGGVMEISKVILQADPSIPHTLWESAASVLATILQFCSEFYLEIPVAVLVRLLQSGSETTVSGALSALLVLESDDGTSAVAEAMAETGAVEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQLQQARLLATLALGDLFQNEGLARTADAVAACRALVNVLEDQPTEEMKVVAICALQNLVMHSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVSSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQFLIQSGPPRFQEKAEFLLQCLPGTLVVIIKSGNNMKQSVGNASVYCKLTLGNTPPQQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03127 2154 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Vivi3g03127 2154 Gene3D - 48 404 IPR011989 -
Vivi3g03127 2154 Gene3D - 1175 1355 IPR011989 -
Vivi3g03127 2154 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2033 2154 - -
Vivi3g03127 2154 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1828 1871 IPR000225 GO:0005515
Vivi3g03127 2154 Gene3D - 879 1168 IPR011989 -
Vivi3g03127 2154 Gene3D - 1819 2031 IPR011989 -
Vivi3g03127 2154 SUPERFAMILY ARM repeat 1026 1160 IPR016024 -
Vivi3g03127 2154 ProSiteProfiles C2 domain profile. 2014 2131 IPR000008 -
Vivi3g03127 2154 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2032 2151 IPR035892 -
Vivi3g03127 2154 Gene3D - 1366 1697 IPR011989 -
Vivi3g03127 2154 Gene3D - 405 650 IPR011989 -
Vivi3g03127 2154 SUPERFAMILY ARM repeat 659 1060 IPR016024 -
Vivi3g03127 2154 SMART C2_3c 2034 2130 IPR000008 -
Vivi3g03127 2154 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1197 1241 IPR000225 GO:0005515
Vivi3g03127 2154 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1381 1615 - -
Vivi3g03127 2154 SMART arm_5 1610 1649 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 1734 1772 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 817 859 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 481 523 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 311 360 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 1230 1271 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 94 135 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 1566 1608 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 136 176 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 1440 1480 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 733 771 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 1399 1439 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 1312 1353 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 1860 1900 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 567 607 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 525 565 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 268 309 IPR000225 GO:0005515
Vivi3g03127 2154 SMART arm_5 1482 1522 IPR000225 GO:0005515
Vivi3g03127 2154 MobiDBLite consensus disorder prediction 1 23 - -
Vivi3g03127 2154 Gene3D C2 domain 2032 2154 IPR035892 -
Vivi3g03127 2154 Pfam Armadillo/beta-catenin-like repeat 526 565 IPR000225 GO:0005515
Vivi3g03127 2154 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Vivi3g03127 2154 SUPERFAMILY ARM repeat 1187 1569 IPR016024 -
Vivi3g03127 2154 Gene3D - 1703 1818 IPR011989 -
Vivi3g03127 2154 MobiDBLite consensus disorder prediction 30 46 - -
Vivi3g03127 2154 SUPERFAMILY ARM repeat 1621 2031 IPR016024 -
Vivi3g03127 2154 SUPERFAMILY ARM repeat 65 641 IPR016024 -
Vivi3g03127 2154 CDD C2 2035 2125 - -
Vivi3g03127 2154 Gene3D - 651 876 IPR011989 -
Vivi3g03127 2154 Pfam C2 domain 2033 2129 IPR000008 -
Vivi3g03127 2154 Coils Coil 297 317 - -
Vivi3g03127 2154 MobiDBLite consensus disorder prediction 1 55 - -
Vivi3g03127 2154 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 28 2154 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03127 Vivi-Chr3 53074339 53084352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03127 448 605 U-box Gene Family AT3G46510 30.846 4.16e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03127 - - gmx:100816765 3516.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05065 5 151358172 151368010 Vivi3g03127 3 53074339 53084352 PCT