Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03112 ATGAATTCGCCGCAGTTTGTTTCGTCGAGAAGGATGAGTGTGTATGATCCTATTCATCAGATTAATATGTGGGGAGAAGGGTTTAAGAGTAACGGGAATTTAAGCGCGTCGATGACGTTGATCGATGAGGCGGATTTGAAATTCGATAGTAGTCAGTCAGAGGATGCTTCTCATAGTATACTTGGAACATCTAACAAGTATGATCAAGAAGCGAGTAGACCGATTGATAAGATACAGAGGCGTCTTGCACAAAATCGAGAGGCTGCTCGCAAGAGCCGTTTGCGGAAAAAGGCTTATGTGCAACAGTTAGAATCAAGTCGTTTGAAGTTGGTGCAGTTGGAACAAGAGCTTGAACGTGTAAGACAGCAGGGAATGTATATGGGTGGTGGATTGGATTCGAATAATATGTGTTTTGTTGGACCTATGAATTCAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGACGAGCAAAACCGGCAAATCACAGAAATGAGAATTGCTTTAAACGCACATATAAGTGACATAGAGCTCAGGATTCTAGTCGATGGTATGATGAACCACTATACTGAAATCTATCGCATGAAATCCGCAGCGGCAAAAGCAGATGTTTTCTATGTGATGTCCGGCATGTGGAAAACAACAGCTGAAAGATTTTTCTTGTGGATCGGTGGCTTTCGCCCTTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAGCCCTTGACAGAGCAACAACGGTTGGATATTGATAATCTTGGACAATCATGTCAACAAGCGGAAGACGCCCTTTCGCAAGGCATGGAGAAACTCCGGCAAACACTCGCAGATAGTGTAGCAGCTGGACAATTCATGGAAGGAACTTATGTTCCACAAATGGCTTCTGCAATGGAGAGGTTAGACGCTCTCGTAAGCTTTGTGAATCAGGCTGACCATCTTCGGCAGGAAACCTTACAGCAAATGTCACGAATACTTACAATCCGTCAGTCAGCTAGGTGCTTGCTGGCGTTGGGAGAATATTTCCAACGTCTGAGGGCTTTGAGCTCACTATGGTCTAATCGACCCCGCGAACCAGCTTAG 1086 0.4466 MNSPQFVSSRRMSVYDPIHQINMWGEGFKSNGNLSASMTLIDEADLKFDSSQSEDASHSILGTSNKYDQEASRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMGGGLDSNNMCFVGPMNSGIAAFEMEYGHWVDEQNRQITEMRIALNAHISDIELRILVDGMMNHYTEIYRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFMEGTYVPQMASAMERLDALVSFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03112 361 PANTHER TRANSCRIPTION FACTOR TGA9 5 359 - -
Vivi3g03112 361 MobiDBLite consensus disorder prediction 53 69 - -
Vivi3g03112 361 Coils Coil 96 123 - -
Vivi3g03112 361 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700|GO:0006355
Vivi3g03112 361 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 119 IPR004827 GO:0003700|GO:0006355
Vivi3g03112 361 Pfam bZIP transcription factor 77 115 IPR004827 GO:0003700|GO:0006355
Vivi3g03112 361 MobiDBLite consensus disorder prediction 52 72 - -
Vivi3g03112 361 FunFam BZIP family transcription factor 76 125 - -
Vivi3g03112 361 CDD bZIP_HBP1b-like 77 129 - -
Vivi3g03112 361 SUPERFAMILY Leucine zipper domain 77 117 IPR046347 GO:0003700|GO:0006355
Vivi3g03112 361 ProSiteProfiles DOG1 domain profile. 146 356 IPR025422 GO:0006351|GO:0043565
Vivi3g03112 361 Gene3D - 76 126 - -
Vivi3g03112 361 Pfam Seed dormancy control 163 237 IPR025422 GO:0006351|GO:0043565
Vivi3g03112 361 SMART brlzneu 73 133 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03112 Vivi-Chr3 52667255 52670054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03112 3 361 Calmodulin-binding Proteins AT5G65210 68.681 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi3g03112 DOG1 6.8e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03112 3 52667255 52670054 Vivi3g03112 3 52667255 52670054 ECH
Vivi5g05052 5 151130688 151133201 Vivi3g03112 3 52667255 52670054 PCT