Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03104 ATGCATGCACGTAATTCTCCTTCGAGTTTTCAATACAAAAGTTCTCGAATTCGTGTTTTTCCTTTGGGTTTGGATGTTTTTGCTCAAATGTTATTTGGTCAAAATAACATAAACACGAGGTTTGATTCCATGGGAGAGGAACAATTTGTTCCGGTATCAAAGGAAGCCAATGAATCTCTTGAGAAGGTGAAGATTGAAAATCGTGATGCCATTGAAAAGTGTAGTGTTTGTCAATTTGAGTTCAATGCTCGAACGGAGGTCACAAAAATGCCATGCAATCATTTGTATCATCAAGAATGCATTGTTGAGTGGCAGGAAACTAATCACATGTGCCCAACTTCAACAAGTGGCTGA 354 0.3842 MHARNSPSSFQYKSSRIRVFPLGLDVFAQMLFGQNNINTRFDSMGEEQFVPVSKEANESLEKVKIENRDAIEKCSVCQFEFNARTEVTKMPCNHLYHQECIVEWQETNHMCPTSTSG 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03104 117 SUPERFAMILY RING/U-box 58 113 - -
Vivi3g03104 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 116 IPR013083 -
Vivi3g03104 117 ProSiteProfiles Zinc finger RING-type profile. 74 112 IPR001841 -
Vivi3g03104 117 Pfam Ring finger domain 73 113 IPR001841 -
Vivi3g03104 117 SMART ring_2 74 114 IPR001841 -
Vivi3g03104 117 Coils Coil 53 73 - -
Vivi3g03104 117 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03104 Vivi-Chr3 52555206 52555559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03104 51 112 C3H Transcription Factor Family AT1G18760 39.683 5.69e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03104 - - vvo:131658049 246.128