Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03103 ATGATGAATTCCATGTCCTGCAATTTTTCTTGGGAACCATTTTGCGCCCCTTTGGATGAAAACGAGGTAAGATTCTATCAATCTTTCGAACAAGGACATGTTGGAGATTTTGTTCGCATTAAGGTTCGTGTGAAACATGAACTATGCATCACTCCCCAACAACACCCTTCCTTAATTTTACCTTTTGAGCGGTTTTTATATGAACAAATCATGTTTGTACCATTGCAAGATTTTCTACAACATGCTTCTATATACATGCAAGTTCATTTTCCTAATGTTATCATCCCCCATGAGCTGATGTACTCAATGCTGCCGTTTTTAATGAGATATGTCTGGAATGCACCAAACTCGCCTTCGGGTTTTCATTACGAAGGTTCTCGAATTCGTGTTTTTCCTTTGGGTTTGGATGTTTTTGTTCAAATGTTATTTGGTCAGTGTGACAATGTTTTCATCAATAACATAGCTGTGAGGTTGGATTCTATTGGAGAGATACAATTTGTTCCGGCATCAAAGGAAGCCATTGAATCTCTTGAGAAGGTGAAGATGGAAAACTCTAATGCCATTGAGAAGTGTAGTGTTTGTCAATTTGAGTTGAATGCTGGAATGGAGGTTACAAAAATGCCATGCAATCATTTGTATCATCAAGATTGCATTGTTCAGTGGCTGAAAACGAGTCACATGTGCCCAATGTGTCGCTACCCAATGCCAACTTCAACCAGTGGCTGA 726 0.3912 MMNSMSCNFSWEPFCAPLDENEVRFYQSFEQGHVGDFVRIKVRVKHELCITPQQHPSLILPFERFLYEQIMFVPLQDFLQHASIYMQVHFPNVIIPHELMYSMLPFLMRYVWNAPNSPSGFHYEGSRIRVFPLGLDVFVQMLFGQCDNVFINNIAVRLDSIGEIQFVPASKEAIESLEKVKMENSNAIEKCSVCQFELNAGMEVTKMPCNHLYHQDCIVQWLKTSHMCPMCRYPMPTSTSG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03103 241 CDD RING-H2_PA-TM-RING 191 232 - -
Vivi3g03103 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 238 IPR013083 -
Vivi3g03103 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 141 236 - -
Vivi3g03103 241 SUPERFAMILY RING/U-box 174 238 - -
Vivi3g03103 241 Pfam Ring finger domain 190 232 IPR001841 -
Vivi3g03103 241 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Vivi3g03103 241 SMART ring_2 191 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03103 Vivi-Chr3 52549177 52550021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03103 155 236 C3H Transcription Factor Family AT1G18760 35.294 6.46e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03103 - - psat:127082836 441.425