Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03101 ATGGAACGCGATGAGGGAAAACAATCACCTCAAAAGAATCCATACACAGAACTTGAGGAAGTTAGCTCTGACTTTCTTCTAGCAATTGGCTTGCAAGAACAAGAGTTAGAGAGAACAACAGTCACAAATCTAGCAACAATTGAAAGTGAAAGTGAAGAAGAAGATTCATCAAGTGAATCTTCTTTCATTAATGATGATATTGGTGATGCCGATTTTACTTTGAGCCAGGAATTCGAAGCCGATCTTCGGTTTCTTGAAGACGAAGAAAGCAATATCGACGACGACGAGGACTACGACGAGGATGAAATGGATATAGAAGAAGACGACGTTGATCCCGATGAATTATCGTACGAAGAGTTGCTTGAGTTAGGAGAGTTTATAGGAGAAGAAGCTAGAGGATTATCAAGAAAGGAAATTTCTACTTGCTTAAATCCTTATACTTGCAAAACTTCTGAAACCAAAAGTGGAATAGATCTTTGTGTGATTTGTCAGATTGAATATGAAGAAGGTGAAGCTTTGGTTGCACTTCATTGTGATCATCCTTATCATAGAGATTGCATAAGCAAATGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCAAACAAGGATAAGAACATTTGA 642 0.3754 MERDEGKQSPQKNPYTELEEVSSDFLLAIGLQEQELERTTVTNLATIESESEEEDSSSESSFINDDIGDADFTLSQEFEADLRFLEDEESNIDDDEDYDEDEMDIEEDDVDPDELSYEELLELGEFIGEEARGLSRKEISTCLNPYTCKTSETKSGIDLCVICQIEYEEGEALVALHCDHPYHRDCISKWLQIKKVCPICSNEVSTPNKDKNI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03101 213 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g03101 213 Pfam Ring finger domain 159 200 IPR001841 -
Vivi3g03101 213 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 205 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vivi3g03101 213 SMART ring_2 160 200 IPR001841 -
Vivi3g03101 213 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Vivi3g03101 213 MobiDBLite consensus disorder prediction 45 67 - -
Vivi3g03101 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 213 IPR013083 -
Vivi3g03101 213 SUPERFAMILY RING/U-box 159 207 - -
Vivi3g03101 213 FunFam E3 ubiquitin ligase BIG BROTHER-related 126 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03101 Vivi-Chr3 52533526 52534538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03101 107 204 C3H Transcription Factor Family AT3G63530 49.505 5.95e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03101 K19045 - gmx:100526881 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03101 3 52533526 52534538 Vivi3g03101 3 52533526 52534538 ECH
Vivi3g03101 3 52533526 52534538 Vivi3g03101 3 52533526 52534538 PCT