Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03100 ATGGCATCAGAACTTCAATTGCCACCGGGCTTCCGATTCCATCCAACGGATGAGGAGCTCGTCATGCACTATCTCTGCCGCAAATGCACGTCGCAACCTATCTCCGTTCCGATCATCGCTGAAATTGATTTATATAAATATGATCCTTGGGAACTTCCTGCTTTGGCTTCTTATGGAGAAAAGGAGTGGTACTTTTTCTCGCCACGAGACAGAAAATATCCGAACGGTTCAAGGCCGAACCGGGCGGCTGGGTCTGGATACTGGAAAGCAACCGGAGCGGATAAACCCATAGGTAACCCGAAACCGGTTGGAATCAAAAAAGCGTTGGTTTTTTACGCGGGGAAAGCACCTAAAGGTGATAAAACCAATTGGATCATGCACGAGTATCGTTTGGCTGACGTTGATCGCTCCATTCGCAAAAAGAACAGTTTAAGGTTGGATGATTGGGTGCTTTGCCGTATTTACAACAAGAAAGGAACTATCGAGAAACAACCAAACGGTGTTGTTGTTAACCGGAAAACTGAGCATTCGGAAGTTATAGATAAGAAGCCGGATATTCTGACACGCGGCGGAGGTCTTCCGCCGCATCCTCCGCCGCCGGGAATGAGAGATTATATGTATTTTGACACGTCGGATTCAATTCCGAAGCTGCACACGGATTCGAGTTGCTCGGAACACGTGGTGTCGCCGGAGTTTGCGAGCGAGGTGCAGAGCGAACCTAAATGGAACGAGTGGGAAAAGAGTCTTGAATTTCCTTATAATTACGTGGATGCCACTTTAACCACTGGTTTTGGATCTCAATTTCCGAGCAATAATCAGATGTCGCCGTTGCAGGATATGTTCATGTACTTGCCCAAAACCTTTTGA 867 0.4717 MASELQLPPGFRFHPTDEELVMHYLCRKCTSQPISVPIIAEIDLYKYDPWELPALASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGNPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRLDDWVLCRIYNKKGTIEKQPNGVVVNRKTEHSEVIDKKPDILTRGGGLPPHPPPPGMRDYMYFDTSDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWNEWEKSLEFPYNYVDATLTTGFGSQFPSNNQMSPLQDMFMYLPKTF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03100 288 FunFam NAC transcription factor 16 161 - -
Vivi3g03100 288 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Vivi3g03100 288 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Vivi3g03100 288 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Vivi3g03100 288 PANTHER NAC TRANSCRIPTION FACTOR 56 7 211 - -
Vivi3g03100 288 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03100 Vivi-Chr3 52510297 52511746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03100 1 288 NAC Transcription Factor Family AT1G01720 71.237 7.58e-149 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g03100 NAM 4.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03100 - - gmx:100805768 499.59