Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03089 ATGGAGGTGGTGGATGGTAGAGAATTACAGTTACAACAACAACAACCACAGAACTTGAAGCAAGAACAGGCTGAACAGAATTTTCATGTGTTGGCTGTAGATGATAGTGTGATTGATAGGAAGCTTCTGGAGAGACTTCTAAGAGGTTCTTCATGCAAAGTTACCTGTGTGGATTCTGGAGATAAGGCTTTGGAATATCTTGGACTCAATATTGATGAAGTTGATACAAATGATTCTTCTACTGAGACTATATTAGAGTCATCTGCTGCTATTCCTCTACCATTGCAGCTTCAAGAGGGAATAGGCAAAGTGAATTTGATCATGACAGATTATTGCATGCCTGGGATGAGTGGCTATGATTTACTCAAAAGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTTGTGATCATGTCTTCAGAAAATGTACCTTCCAGAATTACCATGTGCTTGGAAGAAGGTGCAGAAGAGTTTCTGTTGAAGCCTCTTCAGATATCAGATTTGCAGAAGCTTCAACCTTATTTTCTTAAATCTCTTGATAATTCTTCAGATGAACATGAATCTAGTAGTATTTCTACAGATTCTTCTGACAATGAAGATGTCATCAACAATGATAACAGTAATGGGATTAGCAAAAGGAAGGCCATGTCTCCTGAGCCTCCAGAGAGATCAAAGCCAAAAATGAAAGGGTTAACGATGGTGGTGTAA 708 0.3898 MEVVDGRELQLQQQQPQNLKQEQAEQNFHVLAVDDSVIDRKLLERLLRGSSCKVTCVDSGDKALEYLGLNIDEVDTNDSSTETILESSAAIPLPLQLQEGIGKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRITMCLEEGAEEFLLKPLQISDLQKLQPYFLKSLDNSSDEHESSSISTDSSDNEDVINNDNSNGISKRKAMSPEPPERSKPKMKGLTMVV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03089 235 MobiDBLite consensus disorder prediction 182 235 - -
Vivi3g03089 235 MobiDBLite consensus disorder prediction 182 213 - -
Vivi3g03089 235 Pfam Response regulator receiver domain 30 170 IPR001789 GO:0000160
Vivi3g03089 235 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 203 IPR045279 GO:0009736
Vivi3g03089 235 CDD REC_typeA_ARR 30 171 - -
Vivi3g03089 235 SUPERFAMILY CheY-like 27 171 IPR011006 -
Vivi3g03089 235 Gene3D - 29 204 - -
Vivi3g03089 235 SMART REC_2 28 172 IPR001789 GO:0000160
Vivi3g03089 235 ProSiteProfiles Response regulatory domain profile. 29 176 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03089 Vivi-Chr3 52330561 52333156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03089 24 178 Response Regulator Gene Family AT3G57040 60.897 5.85e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g03089 Response_reg 8.4e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03089 K14492 - gmx:100801334 283.108