Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03084 ATGAACAGAAAACAGGATGACAAGAATCTTTCCGTCAGACACTCCAACTCTCCAACCATGGCGGAGAGGGTGGACACGGTTGCAAGATTAGCACAGTGGAAAATCGACAATTTTGGACCTTCTTCCTACAAAAAATCCGATCCTTTCAAACTCGGAATCTGGAACTGGCACTTTGCAATAGTAAGGAATAGGTTCTTCTCCATTCATCTTTTTCCAGAACCTTCTCGTGTTTCTAAGGAACACCCACCCGTTGCTAGATTCATTCTTCGTGTCTCCGTTGCTGGTTCATCTCGCAAGTTTATTATTTCACCTGTTTATGAAAGGCTACTTAGGACCCAGGATGACTTTATCTGGTCTGTTGATACTGCTTTCACGGGTCGATTCATCATCGACGTTGAGTTTCTTGACCTGAAGATATGCCATATGAGTGGTGAAGAACCTCGTTCTATATGGTCATCTGATGGAAATTCACCATGCAACAAAGCTCAAAGAAGTACTCTCCATTGCCTCTCTCGCATGCTCGACGAGGCTATACATGCTGACCTAACCATCATAACTTCCAATGGTACATTGAGAGCTCACAAGGCAGTTTTGTCCGCGAGTTCTCCTGTGTTTCAAAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCCTCAACAATTCATATAGAAGACATCTCACTCGAATCATGCACCGCTCTTCTAAGTTACTTGTACGGATCAATCAAACACGAAGATTTCCGGAAACACTGTCTTGCATTGCTCGGTGCAGCTAATAAGTATGACATCGGTGATCTGAAAGATTTATGTGAGGAAAGCCTTCTTGAAGATATTAACTCAGGCAATGTTCTTGAGATGTTAAATGAGGCTTGGCTTTATCAATTACACAAGTTAAAGAAAGGGTGTTTAACGTTCTTATTTGAGTTTGGTAAAATATATGATGTTAAAGATGATGAAATAAATAACCTTTTCCAGCATGCAGATAGGGAGCTAGTGATGGAAATGTTTCATGTGATGCTTACAGTTTCCAACCCAGAATAG 1041 0.4121 MNRKQDDKNLSVRHSNSPTMAERVDTVARLAQWKIDNFGPSSYKKSDPFKLGIWNWHFAIVRNRFFSIHLFPEPSRVSKEHPPVARFILRVSVAGSSRKFIISPVYERLLRTQDDFIWSVDTAFTGRFIIDVEFLDLKICHMSGEEPRSIWSSDGNSPCNKAQRSTLHCLSRMLDEAIHADLTIITSNGTLRAHKAVLSASSPVFQSMFHHNLKEKESSTIHIEDISLESCTALLSYLYGSIKHEDFRKHCLALLGAANKYDIGDLKDLCEESLLEDINSGNVLEMLNEAWLYQLHKLKKGCLTFLFEFGKIYDVKDDEINNLFQHADRELVMEMFHVMLTVSNPE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03084 346 ProSiteProfiles BTB domain profile. 180 239 IPR000210 GO:0005515
Vivi3g03084 346 PANTHER OS08G0495500 PROTEIN-RELATED 20 345 IPR044714 -
Vivi3g03084 346 SMART BTB_4 180 278 IPR000210 GO:0005515
Vivi3g03084 346 CDD BTB_POZ_ZBTB_KLHL-like 179 261 - -
Vivi3g03084 346 Gene3D Potassium Channel Kv1.1; Chain A 150 307 IPR011333 -
Vivi3g03084 346 Pfam BTB/POZ domain 173 276 IPR000210 GO:0005515
Vivi3g03084 346 SUPERFAMILY POZ domain 161 276 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03084 Vivi-Chr3 52245387 52248148 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi3g03084 BTB 1.2e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03084 K10523 - gmx:100787262 518.464