Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03078 ATGATGCAGCAGCAACAACAACAAGTGAGCAATGGTAACAGCAATCGCATAGTTGCAGTAAATGTGACACCTTCAGGCACACCACCTTCTAATCATGACTCTTCGAAGCTCGATCAGACACCAGGATGGAAAAAGTTCTTTACATATGTTGGTCCTGGTTTTCTTGTCTCTTTGGCCTATCTTGACCCTGGAAATATGGAAACTGATTTGCAAGCTGGAGCTAACCATGGTTATGAGCTGTTGTGGATCATACTTATTGGACTCATATTTGCACTTATAATTCAATCATTGGCTGCAAATCTTGGAGTATGCACCGGAAAACATCTTTCTGAAATTTGTAAGGCTGAATATCCATTATTTGTGAAGTACTGTTTATGGATATTAGCAGAGCTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGGACAGCATTTGCTCTTAACATATTATTTCACATTCCAGTATGGGGAGGAGTTTTGATGACTGGATGCAGTACTCTCTTGTTTTTGGGCCTCCAAAGATTTGGAGTAAGGAAGTTGGAACTGTTGATATCGATCTTAGTATTTGTCATGGCTGCATGTTTCTTCGGAGAAATGAGCTATGTAAAACCCCCTGCTGCTGGTGTAGTTGAAGGAATGTTCATCCCTAAACTCAATGGAAATGGCGCCGTAGCCGATGCTATTGCCCTTTTGGGTGCCCTTATCATGCCGCATAATCTTTTCCTCCACTCTGCACTAGTGTTATCTAGAAAAATACCTGGTTCAAAGCGCGGCATCAATGATGCATGTAGATACTTCCTCATTGAGAGTGGTTTCGCTTTGTTTGTCGCATTTCTAATCAATGTTGCAATGATTTCTGTATCTGGAACTGTTTGTACTGCCAAAGACATTACTGCTGAAAATGTTGAACGTTGCAGTGATCTTACCCTTAACTCCGCTTCTTTTCTTCTCAAGAATGTATTGGGGCGTTCAAGCTCAATCATTTATGCCATAGCATTGTTAGCTTCTGGACAAAGTTCTGCCATCACTGGAACCTATGCAGGCCAATTTATCATGCAGGGTTTTTTGGACTTAAAGATGAGAAAATGGGTTAGGAATTTGTTGACTAGGATTGTTGCCATAGCACCCAGTCTTGTTGTCTCTATCATTGGCGGTTCTTCTGGAGCTGGAAGACTTATCATCATCGCATCGATGATTCTTTCTTTTGAACTTCCATTTGCTCTTATTCCACTCCTTAAGTTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCAATGATTATCATTGTCATCTCATGGATACTAGGTTTGGGAATCATTGGTATCAATGTGTACTACCTCATTACTGCTTTTGTGGGTTGGATAATTCATAGCAGTTTACCAAAAGTGGCAAATGTGTTCATTGGGATCATAGTTTTTCCTCTAATGGCACTATATGTTGTCTCAGTTATCTATCTAACCTTCAGAAAAGACACTGTTAAAACATTTGTTGAGGTTAAAGATGACCCAGCAATGCAAACCCACATGGAAAAAGGATTTGTAAGCGATGGTCAGTTAGAGTTGAGTAATGCTCCTTACAGAGAAGATTTAGTTGATAACCCACTGCCAGAGAGACCTAGGTTGTGA 1635 0.4067 MMQQQQQQVSNGNSNRIVAVNVTPSGTPPSNHDSSKLDQTPGWKKFFTYVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWIILIGLIFALIIQSLAANLGVCTGKHLSEICKAEYPLFVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWGGVLMTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGEMSYVKPPAAGVVEGMFIPKLNGNGAVADAIALLGALIMPHNLFLHSALVLSRKIPGSKRGINDACRYFLIESGFALFVAFLINVAMISVSGTVCTAKDITAENVERCSDLTLNSASFLLKNVLGRSSSIIYAIALLASGQSSAITGTYAGQFIMQGFLDLKMRKWVRNLLTRIVAIAPSLVVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGLGIIGINVYYLITAFVGWIIHSSLPKVANVFIGIIVFPLMALYVVSVIYLTFRKDTVKTFVEVKDDPAMQTHMEKGFVSDGQLELSNAPYREDLVDNPLPERPRL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03078 544 Pfam Natural resistance-associated macrophage protein 67 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 45 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 Hamap Divalent metal cation transporter MntH [mntH]. 29 454 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 NCBIfam Nramp family divalent metal transporter 51 417 - -
Vivi3g03078 544 PRINTS Natural resistance-associated macrophage protein signature 228 251 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 PRINTS Natural resistance-associated macrophage protein signature 338 357 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 PRINTS Natural resistance-associated macrophage protein signature 153 172 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 PRINTS Natural resistance-associated macrophage protein signature 125 151 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 PRINTS Natural resistance-associated macrophage protein signature 178 199 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 PRINTS Natural resistance-associated macrophage protein signature 366 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 PRINTS Natural resistance-associated macrophage protein signature 398 417 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03078 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 22 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03078 Vivi-Chr3 52178109 52181725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03078 21 541 Inorganic Solute Cotransporters AT1G15960 58.588 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03078 K21398 - gmx:100787785 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03078 3 52178109 52181725 Vivi3g03078 3 52178109 52181725 ECH