Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03077 ATGGAAGCTTCCTCAAATCATGAGACACAGAAATCTGGATGGAAGAAGTTCTTGCCATATATTGGTCCTGGTTTTCTTGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCCGGAGCTAACCACGGATATGAGCTGCTGTGGTTGGTCCTTATTGGACTCATATTTGCCCTTATAATTCAGTCATTGGCTGCAAACCTCGGCGTAACCACGGGCAAGCACCTTTCAGAAGTATGTAAAATTGAGTATCCATTATTTGTGAAGTATTGCTTATGGTTATTAGCAGAAGTTGCTGTCATAGCAGCTGACATACCTGAAGTGATTGGGACAGCTTTTGCACTTAATATACTATTCAGCATCCCATTGTGGGCTGGAGTTCTGTTGACTGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACACTCCTCGTATTTGTAATGGCGGCATGTTTCTTTGCTGAAATGAGCTATGTAAATCCTCCAGCTTCTGGTGTACTTAAGGGAATGTTTGTGCCTAAACTCTCCGGTGAAGGAGCCGTAGGCGACGCTATTGCTCTTTTGGGTGCCCTTATTATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTATCTAGAAAAGTACCTAGTTCTGGGAAAGGCATCAATGATGCATGTAGATATTTTCTCTATGAGAGTGGATTCGCCCTGTTCGTTGCGTTTTTAATCAATGTTGCAATGATTTCTGTGTCGGGCACAGTTTGCTCCGCCAATGACCTTTCTAGCGACAATGTTGAACACTGCAATGATCTTACCCTTAATTCCGCTTCTTTTCTTCTCAAGAATGTGTTGGGACGATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACCATTACAGGAACCTACGCTGGGCAGTACATTATGCAGGGTTTTTTGAACATAAGGATGAAAAGGTGGAAAAGGAATTTGATGACTAGGTGCATTGCCATAGGCCCTAGTCTTGTTGTTGCCATCGTTGGCGGTTCTTCTGGCTCTAGTCGGCTTATCATCATCGCATCGATGATACTTTCTTTTGAACTTCCATTTGCTTTAATTCCGCTCCTTAAATTTAGCAGTAGCAGTACCAAGATGGGACTTCACAAGAATTCAATGATTATCATAACTATCTCATGGATATTAGGCGCTGGGATCATTGGTATCAATATTTACTACCTCAGTACTGCCTTTGTGAAGTGGCTAATTCATAGTAATCTACCAAAGGTGGCAAATGTGTTCATTGGTATTATAGTGTTTCCTCTAATGGCAATTTATATTGTCTCGGTTATCTACCTTACCTTCAGAAAAGACACCGTTCAGATAGTTATGGAGACGAAGAATGATACAGCAATGCAAAACCAAATAGAAAAGGGAGTTTTGGATCATGATCAGTTAGAATTGAGCCATGTTCCCTATAGAGAAGACTTAGCTGATATCCCACTTCCGCAATAA 1536 0.4225 MEASSNHETQKSGWKKFLPYIGPGFLVSLAYLDPGNMETDLQAGANHGYELLWLVLIGLIFALIIQSLAANLGVTTGKHLSEVCKIEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFSIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLITLLVFVMAACFFAEMSYVNPPASGVLKGMFVPKLSGEGAVGDAIALLGALIMPHNLFLHSALVLSRKVPSSGKGINDACRYFLYESGFALFVAFLINVAMISVSGTVCSANDLSSDNVEHCNDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLNIRMKRWKRNLMTRCIAIGPSLVVAIVGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGLHKNSMIIITISWILGAGIIGINIYYLSTAFVKWLIHSNLPKVANVFIGIIVFPLMAIYIVSVIYLTFRKDTVQIVMETKNDTAMQNQIEKGVLDHDQLELSHVPYREDLADIPLPQ 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03077 511 Pfam Natural resistance-associated macrophage protein 38 399 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 15 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 NCBIfam Nramp family divalent metal transporter 22 388 - -
Vivi3g03077 511 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 7 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 PRINTS Natural resistance-associated macrophage protein signature 96 122 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 PRINTS Natural resistance-associated macrophage protein signature 149 170 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 PRINTS Natural resistance-associated macrophage protein signature 369 388 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 PRINTS Natural resistance-associated macrophage protein signature 199 222 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 PRINTS Natural resistance-associated macrophage protein signature 309 328 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 PRINTS Natural resistance-associated macrophage protein signature 124 143 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 PRINTS Natural resistance-associated macrophage protein signature 337 354 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi3g03077 511 Hamap Divalent metal cation transporter MntH [mntH]. 4 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03077 Vivi-Chr3 52149959 52153710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03077 10 511 Inorganic Solute Cotransporters AT1G15960 59.562 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03077 K21398 - gmx:100787785 847.04