Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03074 ATGTTTACCAGAAGCCGGCGTTTCCCTTCGTCTTCTTCATCCTCCGACAAGAATTCAGATAATTCAGTTTCAAACAAAAAGGTCATCAACGCCGTCAAGACCCGGTTAACGAAGAAACGTCCCGCTCTCGCCGAAGTGACCAATAACAAAAATGCATCTCTCGTCAAAACCTCCGTTGGTGCTCCATCTAAACCTATGGTTCCGTGTGCATCCAAAACTGCGAAGACAAAGAAGGATTCTATTGCAAGTTCAAAGAAAAATGTTACGTCTAAGAACACTTTGCAACCCCCTTTGAGAGTTAAATCAAGTGAATTGGTGCCTGTTAACGAGGCATGTTTGACCAAAACTAGTGAAACTAAGTCTGAAGTTCAAGCCTCCATTGCTGGGCCAAGCAATGATGGTGCTGTTTGTCCTGATTTTAAGAGTGTGGTCTGTGCTCCAAGATGGATGGACATTTCTCCTAGTAACACCTTTAGTGGTTCTGTTTCACTAGATGAGAGCATGTCAACCAATGATTCTTTGATGAGTCCGGAATTCAAATATACTGGCAATGACGATGTTGCGTCGATCAAATCAATTGAAAATCGAACGAGCAACATTCTCAATATTTCAGACTCTTCCAAAATGGCAGGGAGAATACAAGATATTGACACCATACTGAAGTCAAAAGCAAATGAAGTTGTTGATATTGACTGCAATTTCAAAGACCCGCGGTTTTGTGCATCCATTGCCAATGAAATCTATGAAAATTTGCGTGTATCTGAGAAAAATAAAAGGCCATCTATAGACTTCATGGAGAAGATACAGACAGACATCAATGCCGGCATGCGGGCAATGCTTATTGATTGGCTTGTGGAGGTTGCCGAAGAGTACAGACTTCTACCTGATACACTATTTTTGGCAGTTAACTACCTTGATCGCTATCTTTCAGGCAAAGCAATGAACAGACAGCGGTTACAACTACTTGGTGTTTCCTGCATAATGATTGCCGCTAAATACGAGGAAATCTGTTCCCCCAAGGTGGAAGAGTTCTGTTATGTCACTGATAATACATATTCTAAGGAGCAGGTGTTGGAGATGGAGTCCTCTGTGCTGAATTTCTTGAAGTTTGAAATGACAGCTCCTACAACTAGATGTTTTTTGAGACGCTTCATTACTGTCGCCCAACAAACATATGAGGTTCCATTGATGCAGTTGGAGTATTTGGCGGACTATCTAGCAGAGTTATCGCTTATAGAGTATGATATGCTTAAGTACACCCCGTCACTAATAGCTGCATCAGCCACTTTCTTGGCTAAATATATACTACTTCCTATGGAGAAACCTTGGAACTCCATGCTAAGGCATTACACGGGTTACCAAGCATCAGAGTTGTGTGAATGTGTTAAGGGACTACATTTCTTGTACTGCAATGGCTATCATAATTCACCTTCCATTACTGCTATCAGAGAGAAATACAGTCAGCATAAGTTCAAGTTTGTGGCGAAGAAGAATTGTCCTCCATCAATACCAGTAGAAGTATTTCACAACTGA 1533 0.4142 MFTRSRRFPSSSSSSDKNSDNSVSNKKVINAVKTRLTKKRPALAEVTNNKNASLVKTSVGAPSKPMVPCASKTAKTKKDSIASSKKNVTSKNTLQPPLRVKSSELVPVNEACLTKTSETKSEVQASIAGPSNDGAVCPDFKSVVCAPRWMDISPSNTFSGSVSLDESMSTNDSLMSPEFKYTGNDDVASIKSIENRTSNILNISDSSKMAGRIQDIDTILKSKANEVVDIDCNFKDPRFCASIANEIYENLRVSEKNKRPSIDFMEKIQTDINAGMRAMLIDWLVEVAEEYRLLPDTLFLAVNYLDRYLSGKAMNRQRLQLLGVSCIMIAAKYEEICSPKVEEFCYVTDNTYSKEQVLEMESSVLNFLKFEMTAPTTRCFLRRFITVAQQTYEVPLMQLEYLADYLAELSLIEYDMLKYTPSLIAASATFLAKYILLPMEKPWNSMLRHYTGYQASELCECVKGLHFLYCNGYHNSPSITAIREKYSQHKFKFVAKKNCPPSIPVEVFHN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03074 510 SUPERFAMILY Cyclin-like 375 502 IPR036915 -
Vivi3g03074 510 CDD CYCLIN_AtCycA-like_rpt2 375 491 - -
Vivi3g03074 510 PIRSF Cyclin_A_B_D_E 3 144 IPR046965 GO:0016538|GO:0044772
Vivi3g03074 510 PIRSF Cyclin_A_B_D_E 151 509 IPR046965 GO:0016538|GO:0044772
Vivi3g03074 510 MobiDBLite consensus disorder prediction 1 32 - -
Vivi3g03074 510 MobiDBLite consensus disorder prediction 69 92 - -
Vivi3g03074 510 ProSitePatterns Cyclins signature. 277 308 IPR006671 -
Vivi3g03074 510 SMART Cyclin_C_2 375 500 IPR004367 -
Vivi3g03074 510 PANTHER CYCLINS 188 488 IPR039361 -
Vivi3g03074 510 SMART cyclin_7 379 467 IPR013763 -
Vivi3g03074 510 SMART cyclin_7 282 366 IPR013763 -
Vivi3g03074 510 Gene3D - 260 373 - -
Vivi3g03074 510 FunFam Mitotic cyclin 6 260 360 - -
Vivi3g03074 510 MobiDBLite consensus disorder prediction 1 31 - -
Vivi3g03074 510 SUPERFAMILY Cyclin-like 235 372 IPR036915 -
Vivi3g03074 510 Pfam Cyclin, N-terminal domain 246 372 IPR006671 -
Vivi3g03074 510 Gene3D - 246 496 - -
Vivi3g03074 510 FunFam Cyclin A1 362 496 - -
Vivi3g03074 510 Pfam Cyclin, C-terminal domain 375 497 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03074 Vivi-Chr3 52093862 52098990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03074 36 510 Core Cell Cycle Gene Families AT1G44110 49.163 1.30e-154 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03074 K06627 - qsa:O6P43_019779 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03074 3 52093862 52098990 Vivi3g03074 3 52093862 52098990 ECH
Vivi3g03074 3 52093862 52098990 Vivi3g03074 3 52093862 52098990 PCT