LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g03071	ATGAGCTTCTTGAGGCCATCTGCCATGCACAACTTTCTCATCACTTATCCTTCATCCCGATGGATGCCTTGTCAGAGTTGGAGTTTCCTTCGATGGCCCGGTCTCGAAGGCTTCTTCAGAGTTCTTGTGGTTTTTCTTCTTTGGTCCACGTTCTCTCAACTCTGCTTTATACCTTCTTCTTCTATGTACCCTACGCTTCGTGTTGGTGATCGAATTATTGTCGAAAAGGCTTCATATTACATCAGGACTCCTGCTATACGTGATATTGTAACATTTCGAGATCCAACACAGCATTCTGGAGAGAACACACATGTTTTTATCAAGAGAATTGTTGCAAAAGAAGGAGACACCGTTGAGGTTCATCATGGAGTACTCTATGTCAATGGTGTTCCTCAAGAGGAGAATTTTGTGATAGAGCCACCGACATACACAACGAAATTAACTCATGTGCCAAAAGGCCATGTTTATGTTATGGGGGATAATCGCAACAATAGCTATGATTCACATGTATGGGGACCACTTCCTATGAAAAACATAGTTGGAAGATATGTTATGTGCTGTCATAGACCAACAAATTGA	579	0.418	MSFLRPSAMHNFLITYPSSRWMPCQSWSFLRWPGLEGFFRVLVVFLLWSTFSQLCFIPSSSMYPTLRVGDRIIVEKASYYIRTPAIRDIVTFRDPTQHSGENTHVFIKRIVAKEGDTVEVHHGVLYVNGVPQEENFVIEPPTYTTKLTHVPKGHVYVMGDNRNNSYDSHVWGPLPMKNIVGRYVMCCHRPTN	192

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g03071	192	ProSitePatterns	Signal peptidases I signature 3.	155	168	IPR019758	GO:0004252\|GO:0016020
	Vivi3g03071	192	PANTHER	SIGNAL PEPTIDASE I	36	188	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g03071	192	Pfam	Signal peptidase, peptidase S26	38	185	IPR019533	GO:0004252\|GO:0006465
	Vivi3g03071	192	NCBIfam	signal peptidase I	39	186	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g03071	192	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016020
	Vivi3g03071	192	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	150	169	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g03071	192	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g03071	192	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	106	118	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vivi3g03071	192	CDD	S26_SPase_I	53	182	IPR019533	GO:0004252\|GO:0006465
	Vivi3g03071	192	SUPERFAMILY	LexA/Signal peptidase	51	185	IPR036286	-
	Vivi3g03071	192	Gene3D	Umud Fragment, subunit A	59	190	-	-
	Vivi3g03071	192	FunFam	Peptidase/ serine-type peptidase	59	187	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g03071	Vivi-Chr3	52055556	52059116	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g03071	62	184	MADS-box Gene Family	AT1G29960	33.333	9.93e-09	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g03071	K03100		-	gmx:100306121	332.798

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi3g03071	3	52055556	52059116	Vivi3g03071	3	52055556	52059116	ECH