Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03054 ATGGGAAGAGGTAAGATTGAGATCAAGAGGATTGAAAACTCAAGCAACAGACAAGTTACCTATTCAAAGAGAAAGAATGGTATCCTCAAGAAGGCAAAGGAAATAAGTGTTCTCTGTGATGCTCAAGTTTCTCTTATTCTCTTTGGTGCTTCTGGGAAGATGCATGAATACATCAGTCCCTCCACCACGTTGATTGATGTTCTTGACAGATACCAAAGAGCTTCTGGAAAAACTCTCTGGGATGCTAAACATGAGAACCTTAGCAATGAAATTGATAGAATCAAAAAGGAGAATGACAGCATGCAAATTGAACTCAGGCACTTGAAGGGAGAGGATATTACTTCATTGAATTACAAAGAGCTTATGTCCCTTGAGGATGCCCTTGAAAATGGCCTGACTGGTGTTAGAGACAAAAAGATGGAAGTGCATAGGATGTTCAAGAGAAATGGAAAGATTCTGGAAGATGAAAACAAGGAACTCAACTTTCTTTTGCAACAACATTTGGCACTTGAGGGCGTAGGAAACATGCATGGACAATGGATTTAA 546 0.3956 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLNYKELMSLEDALENGLTGVRDKKMEVHRMFKRNGKILEDENKELNFLLQQHLALEGVGNMHGQWI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03054 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi3g03054 181 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Vivi3g03054 181 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi3g03054 181 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi3g03054 181 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vivi3g03054 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi3g03054 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 151 - -
Vivi3g03054 181 Coils Coil 77 111 - -
Vivi3g03054 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi3g03054 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g03054 181 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vivi3g03054 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g03054 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g03054 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03054 Vivi-Chr3 51670426 51672737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03054 1 143 MADS-box Gene Family AT5G20240 69.231 3.09e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi3g03054 K-box 6.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03054 K09264 - gmx:100795861 348.977