Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03049 ATGGGCTCATGTGGTGAACCTGCAGCTGTTGGTGATCCTGTTGGATTGTCTGTAATTGAGCAGCAGCCTTTGAACTCGGGGTTTCCGGAGTCGTGTTCGGAAGATCCTTGTAATGTTTTAGACCTTGATGGTATGGCGGATGGTTTTATGGGAGAGGGGCATGTGGGTTGTTCTGGAAGCTTTGTTGATGTTAATACTGAGGGGTCTGGAGATGGTTTGAGGAATGAATGTGAGATTGATGATTTGTTACAGTTGGAGATGGGTGCTGAAGATGGTTGTCGGAATAGTTTGGGGGTTTGTTCCGAGGAAATTGACGTTTCCGAATTTATAAGTGATGGACTGCTGCACTCGGAGGGAAATTTTCAAGAGGAAGGTAAGGTTGACCTGCCAAATGATTTGCAGAAGGATTGTGGCGAACAGGGTGAGCAGAAGGATGAGAAGAGTGTTGTTTTACCATTGGCAGGAGATGATTCGGAAGCTGTGGAGGATAAAAACGACAGTGGTGATTTGATAGCAAGGGCTGTCAACTGTGTGCTTGGTGCTGGGCATTCTGACGTTTCCCTTGAGTCGGATTTCATGAGAGATTGGCTAGTTGATTGCATCCAAAAAGATGAGCCAGAGGGGCTTATGAGAAATGCAGAGAGCTTGCCGAAGGTTGAAGAAAATTGTGATTATGATGGTTTAGATGGGATGGAAGCCAATTCTTGCTGGCAGATATCTTCTTCGTTGGATGTGGAAGTGCCGTCAGGTGCTTTATTTGTAGACACAAAACTAGAAAGCACAAGTGATAAGCTGCACGATCAAAAAAATGGCGTGGATTGTGACAGTGCTTGCGAAGAAAAGATAAGAGCCACTGTTGATAAAGAAATCACTGATGATTCACGTGTACAATCATTGCCGTCACCAGATTTTCATAGGACCTCGAGGACTTCACCTGTAGTTGATTCACTATGTCAGCCTACCTCGCTGGATCCAGGGAATGAATTGAAGAATGACATATTGCAAATAGAAGATAATTTCTGTATATTGAAGGATAGTTCTGCAGATGCAACTGGTAACTCTACCATTAGAAAATCATTTTGTCCAGAATCAGGACAGTCCTCTTCTGTTTTAATCACCAGTAGCTCTCCAAAGGATGTGCCAGTTCTTCTATCCAAGGGTAACGATGTTTCCATCAAGGATACTTGTGCTGTAGACAATCCTGGACAGACAAATAATGATGGACAAGAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACTGTTACCTTCTCAAAGTAACAGTCAAACAACCAAATTTGGTCGTAATACACAAACCAGAAAGGCTTCTAGAAAATCCACAAACAAAGCCAGTGTAACACATCCAAGCGGGGGTATGAAGTTAAATTTAGAGGCTGCTAGGAAGAAAAGAAGTTGTTTATCCAAACCAGCTAGGTCTTCTGCCTGGGGATTACTGGGGAATGTTGAACAGTTTTTTCAGTATGAAAATGAGCTTGATGTTAGTGAAGCCATGTGCCAGAATGTTGGAAAGGCTAGAAACAACTGTCAAGGTGGGAAAACAACTAAGAATGGTACAAGTTCTAGCTCATTAAATTCAGTTCCAAAGGATAATGTTTCAACTTCAACTACTCGTTTTCGTCTGAAGATCAAGTATGGAAAAGAAAATGATTTAACGGGTTCTGCTTCCTACAAGGGGCCTGATTCAGGTTCTCAGAAAGTAACCAGCAAATCTGCTGATAAACTTTCCGTAGTGTTGGCTTTAAACAGTTTAGAGCCATTCAGAAAAGACCCAGACAAGGATTGTGTGGTTCTAAATGGACACACTGTAAATAGCCAGTTAGAAAATTCTAAAATAACAGAAAAATCAGAAGGGGATGTAGAGGAACCATGTCATGCAGTTCCTCCAGAGAGAGTGGTTGAGGCATTAGTTAAGCCAATTAATAATTCAGCCATAGATCCCGGAACATCACCTGATTCAGAAGTTATTGATTCAATTCCTGAAGTCCAGGCTGGAGAAAGACATGAAGATGTAAATGTTTATGTGTTAGGTTCTTCTAATGAGTTAAATTCTAATTTGGATGTTACCTTCCGGAAGAGAGGGAAGAAAAAAGACAGCCTTATTGGTTCAGGCAATTGTATCACTGAGGATGGATCGCATGGTCAACCAGGTAATAATGGAGCTATGCATTCAAAAAACCATAGACAGAAGAACTGTAGTGATGTGGTTAGCTCTCTAGAATTGTCTACTTCCACTGAGCTAAGCAAATCTATAAAGAGTAAAGAATTGGCGGCAAAATCATTGCCCCTCTCGGGAGAGACTGTACTCGGAGGTTCCGCTAAGGGTTTGAAAGTTCAAAGTCACGTGACAGTCAAGACAGTTGGCAAAACATCTGGTGATCATGAAGTTTCTGAATTCAAGGGTTCTGAGGATTTGCCATCTTCTACAAGACCTTTGGGTCGTAAACTACCTAAAAGTCTTGAACCTACTAGTAAATTTAGCAAGGCCAAAACCAACGCTTCTGACTCGACAAGCAGGAAAAAGACTACTACTAGACGCAAGGAGAAACAGAAAGAGCCAGTTAAAAAAAGTGAAGTCAAGGGAAAGGGCCTCTCTCTCAAAGTTACACGTGAAGTGGAAGATTGTCCTCATCCAGCAGATGTAGATGGAAATCAAAAGTTGGACGCCGTTGTAAAAATTAATCCCAGTGACAACAGAGTATCAGTCAATGCAGACATCATACCTGGTTCGGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGCCATAAGTGGCGGCGGATTCCAGCTCTGCTTGCAGATCGGATTGATGAAACTAACTGCACCTGGACTTGCAAGGACAGTGGTGATAAAGCGTTTGCTGATTGTGCTATTCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAATTAGGATTATCATATGCATCTGGTGAAGAAGATGTACGAGACGACTCCAAAAATTATAAGGAATTGGAATCTCGACTACCAATGGTTTCCCAAGGGTCATCTTTCACCCACATTTCCACCAACGAGTTTCTGCACCGCAATCCGAAAACTCATACTCTTGACGAGGTAATGGTTTGCCATTGCGAGCCACCTCCAGAAGGCAAGTTGGGATGTGGGGATGAATGTCTAAACCGGATACTTAACATTGAATGTGTGGAAGGAACTTGCCCATGTGGGGACCGTTGTTCTAATCAGCAGTTCCAAAAGCGCAAGTATTCCAGACTGAAATGGTTTAAATGTGGGAAAAAGGGTTATGGACTGAAGGCACTTGAGCGGGTACCGAAAGGCCACTTTATTATTGAATACGTTGGAGAGGTCCTTGATAATCATGCATATGAGGAGCGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAACGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAATTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAACTGTCAGACAGAAAAATGGGTGGTTAATGGGGAAATCTGTATTGGATTGTTTGCATTGCGGCATATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTCTGGTGCTGCTGCTAAAAAATGTTATTGTGGCTCACCTAAATGTCGAGGTTATATAGGTGGTGGTGATTCACTTAAAGATGAGCTTATAGTTCAAGGTGATTCAGATGATGAGTTTCCTGAACCATTGATGCTCACTGAAAATGGTGAAGTTGAGGACTGCACACGTATGCCCAAGTACTATGATAATGTCGATACAGAATCTTCTAGGCGTTCATTTACAGACATGGATGTATTGGACAAGTCTGCAACTGCTATAGATGCAGATGGTTCTCCAGAGAAAGATAGTTCTATGAACCATGCCTCTGCTGTTTCCCTGTTGCACAGTTCGGTTGAAGTGGAAGACTCAAAAGGCAGTTTACCATCTTCTGATCGAATAGAAGAAATTTCCCAACAAATGGAGGATACAACAAGCAAACCCATGCCAGCTGTCAGCAAAGTATTGTCGAATTCTACTGATAGTAGAGAATCAAAGTCTGAAATGGTTGAAGGCGGAAATGGTTTTTCACAATCACATCTGCCTGTGAAAACTCCTCAAAGAAGTGCTTCTGGTAAAAAGGCTAAAGTCATTGCTAATGCTGCAAATGCCCTTACAGCTGAGGTGGCAGCCAATCGATTGCCAGTGTCATCTATCAAACACAAAAAAGTAGTCGAAGGTTCTTCCAATGCACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTGAAACTATTGCTTCTCACCGTGGCTTCAGGTGATAGAATTAATGGTGAAGCAATTCAGAGCAATCGAGATCTTTCCATGATCCTTGACGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATGTAATTAGTAAAAATGGTTTACAGATGTTGCATAAGATCTTGAAGCAGTACAGGCAAGACTTTAAAAAAATTCCAATACTCCGAAAGCTTCTTAAGGTCTTAGAGTACCTGGCAGCAGGCAAGGTTTTGACACCGGAACATATCAAGAGTGGCCCTCCTTGTCGTGGAATGGAGAGTTTTAGGGAATCAATGCTGTCTCTGACAGAGCACGATGACAAACAGGTTCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCCAAGACATAGCAGAAAACGTGGCTATATGGACAGGGATGATAATAGGGAATCTCACAGAGATTTCAACTGTAACAGATTTTCAGTATCTCATAATCATAGGCAAGAACAGCGAGTAAGACCTAAGGAAGCAATTGATTGTGGTCAGCAGTCAAAGCCTGTGACAACTTCAACTTCAGTAGATGCTGGTGCCCAGGAGAGTTGTTCTACACTGTCTTTGGATGGAGTTGAGATCAAGGGGGAGAAGAAACGCAAGCGCAAGAGCCGATGGGATCAACCGGCCGAACCAAATTCATATTCTGATGCTGTTATTGGCTCTACCAATGAAAGCCTCAATGAAGAAATTCCACCAGGGTTTTCATGTCCAATACGGTCATTAAACAGTGCACTAAACTCTGGTGGTCCTGTTTTGCCAAATGCAAGTCATCCTGGATGGCCCTCTAGTTTGGTTACTGGTCAGCCAAAACAGAAATTTAATTCTCGTTTGCCTGTCTCATATGGAATGCCATGGTATGTTGCCCAGCAATATGGAACTCCTCATGCTGAAATCAAAGGGGGTTGGGTCACTGCTCCTGGTGTGCCTTTCAACCCATTTCCTCCATTACCCCCACATCCACGGGATATCAAAGACTGTCAGCCTTCTAATACTGATGGCATGGAAGTTGATCAACCTGCTGAAGTTAAGCAACGGGAAACCGATGGTCTGGTTAATTGTTGCTCAGAATCAGATGATACGACTCCCAGCACAACTGGTGCTAAGTTTGAAGACACAAACCTTGAATGCAATAATGATAAACACGACCCCAAGCGATTGAAGGGTGACTCCAATGATTTGGGAAAGAATGACTTTAGACAGCAGAAATGGAATAATTCAAAAATACATCGAACATGGTTCAAGAGGAATGCAGGAAAATGTAATGGGAACAACTCTAGTGGTGATGTGTGCAGTGTAGATGTAGGAGATGTATTAAAAGAATCAAAAGTTAATAGTTATTCGAAGGATGCAAACTGTAGAGATGAGACAGGTGGGAAATAA 5814 0.4231 MGSCGEPAAVGDPVGLSVIEQQPLNSGFPESCSEDPCNVLDLDGMADGFMGEGHVGCSGSFVDVNTEGSGDGLRNECEIDDLLQLEMGAEDGCRNSLGVCSEEIDVSEFISDGLLHSEGNFQEEGKVDLPNDLQKDCGEQGEQKDEKSVVLPLAGDDSEAVEDKNDSGDLIARAVNCVLGAGHSDVSLESDFMRDWLVDCIQKDEPEGLMRNAESLPKVEENCDYDGLDGMEANSCWQISSSLDVEVPSGALFVDTKLESTSDKLHDQKNGVDCDSACEEKIRATVDKEITDDSRVQSLPSPDFHRTSRTSPVVDSLCQPTSLDPGNELKNDILQIEDNFCILKDSSADATGNSTIRKSFCPESGQSSSVLITSSSPKDVPVLLSKGNDVSIKDTCAVDNPGQTNNDGQEAVEVDCITESILLPSQSNSQTTKFGRNTQTRKASRKSTNKASVTHPSGGMKLNLEAARKKRSCLSKPARSSAWGLLGNVEQFFQYENELDVSEAMCQNVGKARNNCQGGKTTKNGTSSSSLNSVPKDNVSTSTTRFRLKIKYGKENDLTGSASYKGPDSGSQKVTSKSADKLSVVLALNSLEPFRKDPDKDCVVLNGHTVNSQLENSKITEKSEGDVEEPCHAVPPERVVEALVKPINNSAIDPGTSPDSEVIDSIPEVQAGERHEDVNVYVLGSSNELNSNLDVTFRKRGKKKDSLIGSGNCITEDGSHGQPGNNGAMHSKNHRQKNCSDVVSSLELSTSTELSKSIKSKELAAKSLPLSGETVLGGSAKGLKVQSHVTVKTVGKTSGDHEVSEFKGSEDLPSSTRPLGRKLPKSLEPTSKFSKAKTNASDSTSRKKTTTRRKEKQKEPVKKSEVKGKGLSLKVTREVEDCPHPADVDGNQKLDAVVKINPSDNRVSVNADIIPGSGLGEQPQSPRNAWVSCDDCHKWRRIPALLADRIDETNCTWTCKDSGDKAFADCAIPQEKSNAEINAELGLSYASGEEDVRDDSKNYKELESRLPMVSQGSSFTHISTNEFLHRNPKTHTLDEVMVCHCEPPPEGKLGCGDECLNRILNIECVEGTCPCGDRCSNQQFQKRKYSRLKWFKCGKKGYGLKALERVPKGHFIIEYVGEVLDNHAYEERQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCQTEKWVVNGEICIGLFALRHIKQDEELTFDYNYVRVSGAAAKKCYCGSPKCRGYIGGGDSLKDELIVQGDSDDEFPEPLMLTENGEVEDCTRMPKYYDNVDTESSRRSFTDMDVLDKSATAIDADGSPEKDSSMNHASAVSLLHSSVEVEDSKGSLPSSDRIEEISQQMEDTTSKPMPAVSKVLSNSTDSRESKSEMVEGGNGFSQSHLPVKTPQRSASGKKAKVIANAANALTAEVAANRLPVSSIKHKKVVEGSSNARFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRINGEAIQSNRDLSMILDALLKTKSRAVLNDVISKNGLQMLHKILKQYRQDFKKIPILRKLLKVLEYLAAGKVLTPEHIKSGPPCRGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRHSRKRGYMDRDDNRESHRDFNCNRFSVSHNHRQEQRVRPKEAIDCGQQSKPVTTSTSVDAGAQESCSTLSLDGVEIKGEKKRKRKSRWDQPAEPNSYSDAVIGSTNESLNEEIPPGFSCPIRSLNSALNSGGPVLPNASHPGWPSSLVTGQPKQKFNSRLPVSYGMPWYVAQQYGTPHAEIKGGWVTAPGVPFNPFPPLPPHPRDIKDCQPSNTDGMEVDQPAEVKQRETDGLVNCCSESDDTTPSTTGAKFEDTNLECNNDKHDPKRLKGDSNDLGKNDFRQQKWNNSKIHRTWFKRNAGKCNGNNSSGDVCSVDVGDVLKESKVNSYSKDANCRDETGGK 1937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03049 1937 Pfam AWS domain 1053 1087 IPR006560 GO:0005634|GO:0042054
Vivi3g03049 1937 FunFam Histone-lysine N-methyltransferase 989 1246 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1374 1389 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1828 1850 - -
Vivi3g03049 1937 SUPERFAMILY SET domain 1017 1228 IPR046341 -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1621 1657 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 292 315 - -
Vivi3g03049 1937 SMART shorttest3 1038 1089 IPR006560 GO:0005634|GO:0042054
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1344 1366 - -
Vivi3g03049 1937 SMART PostSET_3 1215 1231 IPR003616 -
Vivi3g03049 1937 Pfam SET domain 1101 1207 IPR001214 GO:0005515
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1851 1874 - -
Vivi3g03049 1937 PANTHER SET DOMAIN PROTEINS 444 1689 - -
Vivi3g03049 1937 SMART set_7 1090 1213 IPR001214 GO:0005515
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 831 845 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1642 1657 - -
Vivi3g03049 1937 Pfam CW-type Zinc Finger 930 976 IPR011124 GO:0008270
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1340 1395 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 427 456 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1672 1696 - -
Vivi3g03049 1937 CDD SET_SETD2 1089 1231 IPR044437 GO:0010452|GO:0046975
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 712 738 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 846 870 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 427 458 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 125 148 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 794 870 - -
Vivi3g03049 1937 Gene3D SET domain 987 1241 IPR046341 -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 514 542 - -
Vivi3g03049 1937 ProSiteProfiles AWS domain profile. 1038 1088 IPR006560 GO:0005634|GO:0042054
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 295 315 - -
Vivi3g03049 1937 Gene3D - 920 983 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1819 1876 - -
Vivi3g03049 1937 ProSiteProfiles Zinc finger CW-type profile. 924 978 IPR011124 GO:0008270
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 562 576 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 1621 1638 - -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 704 738 - -
Vivi3g03049 1937 ProSiteProfiles SET domain profile. 1090 1207 IPR001214 GO:0005515
Vivi3g03049 1937 ProSiteProfiles Post-SET domain profile. 1215 1231 IPR003616 -
Vivi3g03049 1937 MobiDBLite consensus disorder prediction 557 576 - -
Vivi3g03049 1937 FunFam Histone-lysine N-methyltransferase 922 983 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03049 Vivi-Chr3 51619942 51632906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03049 1072 1231 Su(var)3-9 homologs AT1G73100 36.082 3.75e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi3g03049 SET 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03049 - - mtr:25489708 2591.99