Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03048 ATGGGCTCATGTGGTGAACCTGCAGCTGTTGGTGATCCTGTTGGATTGTCTGTAATTGAGCAGCAGCCTTTGAACTCGGGGTTTCCGGAGTCGTGTTCGGAAGATCCTTGTAATGTTTTAGACCTTGATGGTATGGCGGATGGTTTTATGGGAGAGGGGCATGTGGGTTGTTCTGGAAGCTTTGTTGATGTTAATACTGAGGGGTCTGGAGATGGTTTGAGGAATGAATGTGAGATTGATGATTTGTTACAGTTGGAGATGGGTGCTGAAGATGGTTGTCGGAATAGTTTGGGGGTTTGTTCCGAGGAAATTGACGTTTCCGAATTTATAAGTGATGGACTGCTGCACTCGGAGGGAAATTTTCAAGAGGAAGGTAAGGTTGACCTGCCAAATGATTTGCAGAAGGATTGTGGCGAACAGGGTGAGCAGAAGGATGAGAAGAGTGTTGTTTTACCATTGGCAGGAGATGATTCGGAAGCTGTGGAGGATAAAAACGACAGTGGTGATTTGATAGCAAGGGCTGTCAACTGTGTGCTTGGTGCTGGGCATTCTGACGTTTCCCTTGAGTCGGATTTCATGAGAGATTGGCTAGTTGATTGCATCCAAAAAGATGAGCCAGAGGGGCTTATGAGAAATGCAGAGAGCTTGCCGAAGGTTGAAGAAAATTGTGATTATGATGGTTTAGATGGGATGGAAGCCAATTCTTGCTGGCAGATATCTTCTTCGTTGGATGTGGAAGTGCCGTCAGGTGCTTTATTTGTAGACACAAAACTAGAAAGCACAAGTGATAAGCTGCACGATCAAAAAAATGGCGTGGATTGTGACAGTGCTTGCGAAGAAAAGATAAGAGCCACTGTTGATAAAGAAATCACTGATGATTCACGTGTACAATCATTGCCGTCACCAGATTTTCATAGGACCTCGAGGACTTCACCTGTAGTTGATTCACTATGTCAGCCTACCTCGCTGGATCCAGGGAATGAATTGAAGAATGACATATTGCAAATAGAAGATAATTTCTGTATATTGAAGGATAGTTCTGCAGATGCAACTGGTAACTCTACCATTAGAAAATCATTTTGTCCAGAATCAGGACAGTCCTCTTCTGTTTTAATCACCAGTAGCTCTCCAAAGGATGTGCCAGTTCTTCTATCCAAGGGTAACGATGTTTCCATCAAGGATACTTGTGCTGTAGACAATCCTGGACAGACAAATAATGATGGACAAGAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACTGTTACCTTCTCAAAGTAACAGTCAAACAACCAAATTTGGTCGTAATACACAAACCAGAAAGGCTTCTAGAAAATCCACAAACAAAGCCAGTGTAACACATCCAAGCGGGGGTATGAAGTTAAATTTAGAGGCTGCTAGGAAGAAAAGAAGTTGTTTATCCAAACCAGCTAGGTCTTCTGCCTGGGGATTACTGGGGAATGTTGAACAGTTTTTTCAGTATGAAAATGAGCTTGATGTTAGTGAAGCCATGTGCCAGAATGTTGGAAAGGCTAGAAACAACTGTCAAGGTGGGAAAACAACTAAGAATGGTACAAGTTCTAGCTCATTAAATTCAGTTCCAAAGGATAATGTTTCAACTTCAACTACTCGTTTTCGTCTGAAGATCAAGTATGGAAAAGAAAATGATTTAACGGGTTCTGCTTCCTACAAGGGGCCTGATTCAGGTTCTCAGAAAGTAACCAGCAAATCTGCTGATAAACTTTCCGTAGTGTTGGCTTTAAACAGTTTAGAGCCATTCAGAAAAGACCCAGACAAGGATTGTGTGGTTCTAAATGGACACACTGTAAATAGCCAGTTAGAAAATTCTAAAATAACAGAAAAATCAGAAGGGGATGTAGAGGAACCATGTCATGCAGTTCCTCCAGAGAGAGTGGTTGAGGCATTAGTTAAGCCAATTAATAATTCAGCCATAGATCCCGGAACATCACCTGATTCAGAAGTTATTGATTCAATTCCTGAAGTCCAGGCTGGAGAAAGACATGAAGATGTAAATGTTTATGTGTTAGGTTCTTCTAATGAGTTAAATTCTAATTTGGATGTTACCTTCCGGAAGAGAGGGAAGAAAAAAGACAGCCTTATTGGTTCAGGCAATTGTATCACTGAGGATGGATCGCATGGTCAACCAGGTAATAATGGAGCTATGCATTCAAAAAACCATAGACAGAAGAACTGTAGTGATGTGGTTAGCTCTCTAGAATTGTCTACTTCCACTGAGCTAAGCAAATCTATAAAGAGTAAAGAATTGGCGGCAAAATCATTGCCCCTCTCGGGAGAGACTGTACTCGGAGGTTCCGCTAAGGGTTTGAAAGTTCAAAGTCACGTGACAGTCAAGACAGTTGGCAAAACATCTGGTGATCATGAAGTTTCTGAATTCAAGGGTTCTGAGGATTTGCCATCTTCTACAAGACCTTTGGGTCGTAAACTACCTAAAAGTCTTGAACCTACTAGTAAATTTAGCAAGGCCAAAACCAACGCTTCTGACTCGACAAGCAGGAAAAAGACTACTACTAGACGCAAGGAGAAACAGAAAGAGCCAGTTAAAAAAAGTGAAGTCAAGGGAAAGGGCCTCTCTCTCAAAGTTACACGTGAAGTGGAAGATTGTCCTCATCCAGATGTAGATGGAAATCAAAAGTTGGACGCCGTTGTAAAAATTAATCCCAGTGACAACAGAGTATCAGTCAATGCAGACATCATACCTGGTTCGGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGCCATAAGTGGCGGCGGATTCCAGCTCTGCTTGCAGATCGGATTGATGAAACTAACTGCACCTGGACTTGCAAGGACAGTGGTGATAAAGCGTTTGCTGATTGTGCTATTCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAATTAGGATTATCATATGCATCTGGTGAAGAAGATGTACGAGACGACTCCAAAAATTATAAGGAATTGGAATCTCGACTACCAATGGTTTCCCAAGGGTCATCTTTCACCCACATTTCCACCAACGAGTTTCTGCACCGCAATCCGAAAACTCATACTCTTGACGAGGTAATGGTTTGCCATTGCGAGCCACCTCCAGAAGGCAAGTTGGGATGTGGGGATGAATGTCTAAACCGGATACTTAACATTGAATGTGTGGAAGGAACTTGCCCATGTGGGGACCGTTGTTCTAATCAGCAGTTCCAAAAGCGCAAGTATTCCAGACTGAAATGGTTTAAATGTGGGAAAAAGGGTTATGGACTGAAGGCACTTGAGCGGGTACCGAAAGGCCACTTTATTATTGAATACGTTGGAGAGGTCCTTGATAATCATGCATATGAGGAGCGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAACGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAATTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAACTGTCAGACAGAAAAATGGGTGGTTAATGGGGAAATCTGTATTGGATTGTTTGCATTGCGGCATATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTCTGGTGCTGCTGCTAAAAAATGTTATTGTGGCTCACCTAAATGTCGAGGTTATATAGGTGGTGGTGATTCACTTAAAGATGAGCTTATAGTTCAAGGTGATTCAGATGATGAGTTTCCTGAACCATTGATGCTCACTGAAAATGGTGAAGTTGAGGACTGCACACGTATGCCCAAGTACTATGATAATGTCGATACAGAATCTTCTAGGCGTTCATTTACAGACATGGATGTATTGGACAAGTCTGCAACTGCTATAGATGCAGATGGTTCTCCAGAGAAAGATAGTTCTATGAACCATGCCTCTGCTGTTTCCCTGTTGCACAGTTCGGTTGAAGTGGAAGACTCAAAAGGCAGTTTACCATCTTCTGATCGAATAGAAGAAATTTCCCAACAAATGGAGGATACAACAAGCAAACCCATGCCAGCTGTCAGCAAAGTATTGTCGAATTCTACTGATAGTAGAGAATCAAAGTCTGAAATGGTTGAAGGCGGAAATGGTTTTTCACAATCACATCTGCCTGTGAAAACTCCTCAAAGAAGTGCTTCTGGTAAAAAGGCTAAAGTCATTGCTAATGCTGCAAATGCCCTTACAGCTGAGGTGGCAGCCAATCGATTGCCAGTGTCATCTATCAAACACAAAAAAGTAGTCGAAGGTTCTTCCAATGCACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTGAAACTATTGCTTCTCACCGTGGCTTCAGGTGATAGAATTAATGGTGAAGCAATTCAGAGCAATCGAGATCTTTCCATGATCCTTGACGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATGTAATTAGTAAAAATGGTTTACAGATGTTGCATAAGATCTTGAAGCAGTACAGGCAAGACTTTAAAAAAATTCCAATACTCCGAAAGCTTCTTAAGGTCTTAGAGTACCTGGCAGCAGGCAAGGTTTTGACACCGGAACATATCAAGAGTGGCCCTCCTTGTCGTGGAATGGAGAGTTTTAGGGAATCAATGCTGTCTCTGACAGAGCACGATGACAAACAGGTTCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCCAAGACATAGCAGAAAACGTGGCTATATGGACAGGGATGATAATAGGGAATCTCACAGAGATTTCAACTGTAACAGATTTTCAGTATCTCATAATCATAGGCAAGAACAGCGAGTAAGACCTAAGGAAGCAATTGATTGTGGTCAGCAGTCAAAGCCTGTGACAACTTCAACTTCAGTAGATGCTGGTGCCCAGGAGAGTTGTTCTACACTGTCTTTGGATGGAGTTGAGATCAAGGGGGAGAAGAAACGCAAGCGCAAGAGCCGATGGGATCAACCGGCCGAACCAAATTCATATTCTGATGCTGTTATTGGCTCTACCAATGAAAGCCTCAATGAAGAAATTCCACCAGGGTTTTCATGTCCAATACGGTCATTAAACAGTGCACTAAACTCTGGTGGTCCTGTTTTGCCAAATGCAAGTCATCCTGGATGGCCCTCTAGTTTGGTTACTGGTCAGCCAAAACAGAAATTTAATTCTCGTTTGCCTGTCTCATATGGAATGCCATGGTATGTTGCCCAGCAATATGGAACTCCTCATGCTGAAATCAAAGGGGGTTGGGTCACTGCTCCTGGTGTGCCTTTCAACCCATTTCCTCCATTACCCCCACATCCACGGGATATCAAAGACTGTCAGCCTTCTAATACTGATGGCATGGAAGTTGATCAACCTGCTGAAGTTAAGCAACGGGAAACCGATGGTCTGGTTAATTGTTGCTCAGAATCAGATGATACGACTCCCAGCACAACTGGTGCTAAGTTTGAAGACACAAACCTTGAATGCAATAATGATAAACACGACCCCAAGCGATTGAAGGGTGACTCCAATGATTTGGGAAAGAATGACTTTAGACAGCAGAAATGGAATAATTCAAAAATACATCGAACATGGTTCAAGAGGAATGCAGGAAAATGTAATGGGAACAACTCTAGTGGTGATGTGTGCAGTGTAGATGTAGGAGATGTATTAAAAGAATCAAAAGTTAATAGTTATTCGAAGGATGCAAACTGTAGAGATGAGACAGGTGGGAAATAA 5811 0.423 MGSCGEPAAVGDPVGLSVIEQQPLNSGFPESCSEDPCNVLDLDGMADGFMGEGHVGCSGSFVDVNTEGSGDGLRNECEIDDLLQLEMGAEDGCRNSLGVCSEEIDVSEFISDGLLHSEGNFQEEGKVDLPNDLQKDCGEQGEQKDEKSVVLPLAGDDSEAVEDKNDSGDLIARAVNCVLGAGHSDVSLESDFMRDWLVDCIQKDEPEGLMRNAESLPKVEENCDYDGLDGMEANSCWQISSSLDVEVPSGALFVDTKLESTSDKLHDQKNGVDCDSACEEKIRATVDKEITDDSRVQSLPSPDFHRTSRTSPVVDSLCQPTSLDPGNELKNDILQIEDNFCILKDSSADATGNSTIRKSFCPESGQSSSVLITSSSPKDVPVLLSKGNDVSIKDTCAVDNPGQTNNDGQEAVEVDCITESILLPSQSNSQTTKFGRNTQTRKASRKSTNKASVTHPSGGMKLNLEAARKKRSCLSKPARSSAWGLLGNVEQFFQYENELDVSEAMCQNVGKARNNCQGGKTTKNGTSSSSLNSVPKDNVSTSTTRFRLKIKYGKENDLTGSASYKGPDSGSQKVTSKSADKLSVVLALNSLEPFRKDPDKDCVVLNGHTVNSQLENSKITEKSEGDVEEPCHAVPPERVVEALVKPINNSAIDPGTSPDSEVIDSIPEVQAGERHEDVNVYVLGSSNELNSNLDVTFRKRGKKKDSLIGSGNCITEDGSHGQPGNNGAMHSKNHRQKNCSDVVSSLELSTSTELSKSIKSKELAAKSLPLSGETVLGGSAKGLKVQSHVTVKTVGKTSGDHEVSEFKGSEDLPSSTRPLGRKLPKSLEPTSKFSKAKTNASDSTSRKKTTTRRKEKQKEPVKKSEVKGKGLSLKVTREVEDCPHPDVDGNQKLDAVVKINPSDNRVSVNADIIPGSGLGEQPQSPRNAWVSCDDCHKWRRIPALLADRIDETNCTWTCKDSGDKAFADCAIPQEKSNAEINAELGLSYASGEEDVRDDSKNYKELESRLPMVSQGSSFTHISTNEFLHRNPKTHTLDEVMVCHCEPPPEGKLGCGDECLNRILNIECVEGTCPCGDRCSNQQFQKRKYSRLKWFKCGKKGYGLKALERVPKGHFIIEYVGEVLDNHAYEERQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCQTEKWVVNGEICIGLFALRHIKQDEELTFDYNYVRVSGAAAKKCYCGSPKCRGYIGGGDSLKDELIVQGDSDDEFPEPLMLTENGEVEDCTRMPKYYDNVDTESSRRSFTDMDVLDKSATAIDADGSPEKDSSMNHASAVSLLHSSVEVEDSKGSLPSSDRIEEISQQMEDTTSKPMPAVSKVLSNSTDSRESKSEMVEGGNGFSQSHLPVKTPQRSASGKKAKVIANAANALTAEVAANRLPVSSIKHKKVVEGSSNARFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRINGEAIQSNRDLSMILDALLKTKSRAVLNDVISKNGLQMLHKILKQYRQDFKKIPILRKLLKVLEYLAAGKVLTPEHIKSGPPCRGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRHSRKRGYMDRDDNRESHRDFNCNRFSVSHNHRQEQRVRPKEAIDCGQQSKPVTTSTSVDAGAQESCSTLSLDGVEIKGEKKRKRKSRWDQPAEPNSYSDAVIGSTNESLNEEIPPGFSCPIRSLNSALNSGGPVLPNASHPGWPSSLVTGQPKQKFNSRLPVSYGMPWYVAQQYGTPHAEIKGGWVTAPGVPFNPFPPLPPHPRDIKDCQPSNTDGMEVDQPAEVKQRETDGLVNCCSESDDTTPSTTGAKFEDTNLECNNDKHDPKRLKGDSNDLGKNDFRQQKWNNSKIHRTWFKRNAGKCNGNNSSGDVCSVDVGDVLKESKVNSYSKDANCRDETGGK 1936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03048 1936 ProSiteProfiles SET domain profile. 1089 1206 IPR001214 GO:0005515
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1339 1394 - -
Vivi3g03048 1936 Pfam SET domain 1100 1206 IPR001214 GO:0005515
Vivi3g03048 1936 CDD SET_SETD2 1088 1230 IPR044437 GO:0010452|GO:0046975
Vivi3g03048 1936 Gene3D - 919 982 - -
Vivi3g03048 1936 SMART set_7 1089 1212 IPR001214 GO:0005515
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 292 315 - -
Vivi3g03048 1936 Gene3D SET domain 986 1240 IPR046341 -
Vivi3g03048 1936 SMART PostSET_3 1214 1230 IPR003616 -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1620 1656 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 831 845 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 427 456 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1620 1637 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 712 738 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 846 870 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 427 458 - -
Vivi3g03048 1936 Pfam CW-type Zinc Finger 929 975 IPR011124 GO:0008270
Vivi3g03048 1936 ProSiteProfiles Post-SET domain profile. 1214 1230 IPR003616 -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1671 1695 - -
Vivi3g03048 1936 FunFam Histone-lysine N-methyltransferase 921 982 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 794 870 - -
Vivi3g03048 1936 ProSiteProfiles Zinc finger CW-type profile. 923 977 IPR011124 GO:0008270
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1850 1873 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1818 1875 - -
Vivi3g03048 1936 SUPERFAMILY SET domain 1016 1227 IPR046341 -
Vivi3g03048 1936 ProSiteProfiles AWS domain profile. 1037 1087 IPR006560 GO:0005634|GO:0042054
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1373 1388 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 514 542 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 295 315 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 562 576 - -
Vivi3g03048 1936 FunFam Histone-lysine N-methyltransferase 988 1245 - -
Vivi3g03048 1936 Pfam AWS domain 1052 1086 IPR006560 GO:0005634|GO:0042054
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 704 738 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1343 1365 - -
Vivi3g03048 1936 SMART shorttest3 1037 1088 IPR006560 GO:0005634|GO:0042054
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1827 1849 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 557 576 - -
Vivi3g03048 1936 MobiDBLite consensus disorder prediction 1641 1656 - -
Vivi3g03048 1936 PANTHER SET DOMAIN PROTEINS 444 1688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03048 Vivi-Chr3 51619942 51632906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03048 1071 1230 Su(var)3-9 homologs AT1G73100 36.082 3.84e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi3g03048 SET 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03048 - - mtr:25489708 2585.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03048 3 51619942 51632906 Vivi3g03048 3 51619942 51632906 ECH