Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03043 ATGGAAAAAAGTGGGGCATCAGAGAAAGATATCTTAATCAATGCGCATGCATTTTATGAACAAGATGGAGGTGCACCATTCAATCTTGAGTATGCATGGCGTCTTTTAAAATATGAACCTAAATGGATGGGAGCATTCACCAAAAATTCTTCAAAGAGAACAAAGAATTCTGCTAGTGGTTCATACACGGCATCGCCAAACTCAGAGACACCTTCAAGTTATGAGTTAAACTCATCATCTCCAATGGAGCGTCCAATAGGACAAAAGGCGGCAAAACGAAAAGGTAAGGCAAAGGAAAATGCAAATGCAACTGAACCTCCTTCTAGTGTTATTTCCGATACAAGGAATAAAAGAATGGAAGTAATGGAATATCTAGCACGACTTAAGGAGGAGGAAAACAAATTAGTCGAGGAAAAGATGGAGTTTGAAGCAATGCAATTCAAAATGTCAGACACTTCTAAGATGAATGATAGTCAACGTGAATTTTATGAAAAACGTTGTAATAACCTAAAAGAAAAATATGGATGGTAA 531 0.371 MEKSGASEKDILINAHAFYEQDGGAPFNLEYAWRLLKYEPKWMGAFTKNSSKRTKNSASGSYTASPNSETPSSYELNSSSPMERPIGQKAAKRKGKAKENANATEPPSSVISDTRNKRMEVMEYLARLKEEENKLVEEKMEFEAMQFKMSDTSKMNDSQREFYEKRCNNLKEKYGW 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03043 176 PANTHER - 3 172 - -
Vivi3g03043 176 MobiDBLite consensus disorder prediction 47 84 - -
Vivi3g03043 176 MobiDBLite consensus disorder prediction 46 115 - -
Vivi3g03043 176 Coils Coil 121 148 - -
Vivi3g03043 176 Pfam No apical meristem-associated C-terminal domain 26 166 IPR029466 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03043 Vivi-Chr3 51613721 51614251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03043 4 96 Glutathione S-transferase Gene Family AT5G41240 36.364 1.17e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03043 - - vvo:131607299 315.464