Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03040 ATGCAAAAAATATCTCATGACGGCGGCTCCGGTCGCCGGACGGTTGTTGTCGGAGTCAAAATGGATTCTCCGAGTAAAGAGCTTCTCACTTGGGCTTTAGTTAAGGTTGCTCAACCCGGTGATCTTGTTGTTGCTCTGCATGTTCTTGGCACCCATGAAATTATGAATGGAGATGGAAAATCGTCGTTGCTTTCTCTTGTTAAAGCGTTTGACTCTGTTCTTAATGTTTATGAAGGGTTCTGTAATTTGAAGCAGGTGGATCTTAAGCTGAAGATTTGCCGTGGTTCATCGGTGAAGAAAATTTTGGTGCGAGAAGCGAATGTTTATTGTGCTACTCATGTTATTGTTGGGAGTGTTCATGGCTTCCATAGAATAAGAACTTCTAGCTCTGTGGCTAAGTACTGTGCTGGAAAGATAGCTCATGATTGTTGTGTTCTTGCTGTTAATAATGGGAAAGTTGTGTTCAAGCGCGGTAGATTGGAAGAATCAAGTGTTGTTGATGTACAAGGGTTTGATTGTCATCGTGAGGATGGTCTGCTTGGTTCGATTCGTTCGACACTTGGTAGTGATAAGAAAGTATCGAATGATAATAATGTTAAGGGAATCAAACGGGTTTCGGATCATAGTTTAGGTAAGATTTTACTTGATTCTACAGAGAAAGTAAGAGATCGAAGTTGTTTGATTTGCGGTGCGATGGAAGAGACTTCTTGCCATCTATGTGGAGAAGAGCCTTTGAGAGAATCTAAAGGCTCTTCTTCTCGTGATGGTGAGAAAGAGAATTCTTTGGCAATAGTACCTGTAGTGACAATTGATGTAGGACAACAGCCGGAATTGAAACCGGGTTGGCCGCTACTTCACCGGAAGATTTTATCAGAAAGAGGATTACCTGTTACACCGTTCAAGCGCAACCAGATCTCTGTCGTCCAGTGGGCAATGAGCTTGCCGAATAGAAATGTATCAAATGGTGGCGTTGATCATGATAAACAACTTAGCATTTGTGAACAAGGTTGGGATCAATCGACGGCATTAAATAGTGAATGTGTCGCTCTTGTTCCGGTAGATTCGGTAATAGGGAAAACATATTCATTGCCTGAAAGCACTTTAAAAATCATTCCTAAAGAATTGGAGGGCCTTCCTGAGAAATACTCATCAACTTGTAGATTGTTCGAGTACCAAGAACTTGTATCCGCGACATCAAATTTTTCGCGTGAAAACTTGATCGGTAAAGGAGGAAGTAGTTTGGTTTATCGAGGCTGCCTTCGCGATGGCAAGGAACTTGCTGTCAAGATCTTAAAACCTTCTTATGATGTTCTGAAAGAGTTTCTTTTGGAAATCGAAATCATTACTACATTGCATCATAAAAACATTATTACACTCCTTGGATTCTGCTTTGAGAATGGAAAGCTTCTTCTTGTCTACGATTTCTTATCAAGAGGAAGCCTCGAAGAGAACATTCACGGTACTAAGAAAAACCCTCGCGAGTTCGGTTGGGCACAGAGATATAAGGTTGCTGCAGGTGTTGCGGAGGCTTTAGATTATCTGCATTGTAAAGATGATCATCCTGTGATCCATCGGGATGTCAAATCCTCTAATGTATTACTATCCGAAGATTTTGAACCGCGGTTATCTGATTTTGGATTGGCTACGTGGGCGTCAACCTCGTCATCATATATAACGTGCACGGATGTTGCTGGAACCTTCGGTTATATGGCTCCTGAATACTTCATGTACGGCAAAGTAAGCGATAAGATCGATGTCTATGCATTCGGAGTCGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGTCGATTATCCAAAAGGTCAACAAAGTCTTGTTATGTGGGCTACTCCACTTCTAAGTGATGGAAAGGTGTCACAATTGTTAGATCCTAGTTTGGGTGATAAGTATGATCATGAGGAGATGGAAAGAATGGTTTTAGCAGCCACTCTTTGCATCAAACGTGCTCCAAAAGCTAGGCCTCAAATGAGCATTGTATCAAAGCTCCTTCGAGGCGACGATGATGCAGTCAAGTGGGCAAAGTTAGAAGTCAATGCTTTGGAAGCGCGCGAAAAGCTCGAAGACGAAGAATGTCCACCTAGTAATCTACTAAAGTCACATATTAATCTTGCACTACTTGATGTGGAAGATGACTCACTCTCCATGTCTAGTGTTGAGCAAAGTGTGTCATTAGAGGAATACTTGAGAGGAAGATGGAGTAGAGCATCAAGTTTTGATTGA 2247 0.4192 MQKISHDGGSGRRTVVVGVKMDSPSKELLTWALVKVAQPGDLVVALHVLGTHEIMNGDGKSSLLSLVKAFDSVLNVYEGFCNLKQVDLKLKICRGSSVKKILVREANVYCATHVIVGSVHGFHRIRTSSSVAKYCAGKIAHDCCVLAVNNGKVVFKRGRLEESSVVDVQGFDCHREDGLLGSIRSTLGSDKKVSNDNNVKGIKRVSDHSLGKILLDSTEKVRDRSCLICGAMEETSCHLCGEEPLRESKGSSSRDGEKENSLAIVPVVTIDVGQQPELKPGWPLLHRKILSERGLPVTPFKRNQISVVQWAMSLPNRNVSNGGVDHDKQLSICEQGWDQSTALNSECVALVPVDSVIGKTYSLPESTLKIIPKELEGLPEKYSSTCRLFEYQELVSATSNFSRENLIGKGGSSLVYRGCLRDGKELAVKILKPSYDVLKEFLLEIEIITTLHHKNIITLLGFCFENGKLLLVYDFLSRGSLEENIHGTKKNPREFGWAQRYKVAAGVAEALDYLHCKDDHPVIHRDVKSSNVLLSEDFEPRLSDFGLATWASTSSSYITCTDVAGTFGYMAPEYFMYGKVSDKIDVYAFGVVLLELLSGRKPISVDYPKGQQSLVMWATPLLSDGKVSQLLDPSLGDKYDHEEMERMVLAATLCIKRAPKARPQMSIVSKLLRGDDDAVKWAKLEVNALEAREKLEDEECPPSNLLKSHINLALLDVEDDSLSMSSVEQSVSLEEYLRGRWSRASSFD 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03040 748 SMART serkin_6 401 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03040 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vivi3g03040 748 FunFam Putative receptor-like serine/threonine-protein kinase 476 688 - -
Vivi3g03040 748 SUPERFAMILY Protein kinase-like (PK-like) 382 671 IPR011009 -
Vivi3g03040 748 PANTHER OS08G0249100 PROTEIN 208 682 IPR046958 -
Vivi3g03040 748 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Vivi3g03040 748 Gene3D Phosphorylase Kinase; domain 1 373 475 - -
Vivi3g03040 748 Gene3D HUPs 12 150 IPR014729 -
Vivi3g03040 748 ProSiteProfiles Protein kinase domain profile. 401 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03040 748 Gene3D Transferase(Phosphotransferase) domain 1 476 689 - -
Vivi3g03040 748 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 370 475 - -
Vivi3g03040 748 Pfam Protein kinase domain 402 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03040 748 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 12 149 - -
Vivi3g03040 748 Pfam Universal stress protein family 12 143 IPR006016 -
Vivi3g03040 748 CDD STKc_IRAK 407 672 - -
Vivi3g03040 748 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03040 Vivi-Chr3 51580406 51583950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03040 388 668 Trihelix Transcription Factor Family AT1G68690 47.387 1.00e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi3g03040 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03040 - - pcin:129303222 936.021