Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03031 ATGAATATCATGTCAGGTTTTGTTCCTGTCTCTTCTTCTAATTCTCCTCGTATGTATTCTTCTGGTGGTTCTGGTTCTAGTTCATGGGTTGGGCAGAAAAGAGGCCGTGAAGATGATGTTCGTAATGATGCAGTTGTTGGTTCTTCTTCTCATCAAGATATCACCACAGTTCATAGAAACATGGCTGATTTCAGATTATCTACTTCTCATGAAAACTCATCATCAGGGACAGAACCAAATGCAACTACAACTACACCTTCAAGTACAAGTAATGCAACACAGTCTAGTGAAGCAGCATCGACAAATGAAGAAGAAACCGGAGAGATAAGAAGAAGATACAGAGGAGTTCGACAGAGACCATGGGGAAAATGGGCAGCAGAAATTCGAGATCCACACAAAGCAGCAAGAGTATGGCTCGGAACATTCGACACTGCAGAAGCTGCAGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAACAGAGCGAAACTCAACTTCCCTGAAAATGTTACTGCAACTCAACAACGAACTTTTCCGGCGTATACTTCGTCTTCAACCGTATCTGTTTCTCATTCAACATATTATTCGCCTGCACTACCGCAAATGCAGCCACAACAACCACAACAATTTGTTCAATTTCAAGACTCTTCTGAGTTGTTAAGAGATATTTATCAGTATTCTCAGATTCTGAAAGGTTCTGGTGATCTTCAAGGACTTGATCAATGGTTCTATGAACCGCAAATGGCGGCGATTCATCCATCTTCTGCCATGTTATCGTCAACTCCATCACTTTCCTTGTCACCTTCTTCATCTTCAACTACATTTTCACCTTCCAGTCAATTATCCTCTGCTTCACTTCCTCTGTTTCCAGGTCAGCAAATGGAGTTTTTCGGGCAGCCAGGCGATCACTCTCGTAGCAGAGGATACGGTGGTGGTAGCTCCCATTTACCACCTTCAACATGGTCAGATACTGGTGGCTATCCTCCTCCTCCACCGCCACCTTCATCTGGTTGA 1020 0.4343 MNIMSGFVPVSSSNSPRMYSSGGSGSSSWVGQKRGREDDVRNDAVVGSSSHQDITTVHRNMADFRLSTSHENSSSGTEPNATTTTPSSTSNATQSSEAASTNEEETGEIRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTATQQRTFPAYTSSSTVSVSHSTYYSPALPQMQPQQPQQFVQFQDSSELLRDIYQYSQILKGSGDLQGLDQWFYEPQMAAIHPSSAMLSSTPSLSLSPSSSSTTFSPSSQLSSASLPLFPGQQMEFFGQPGDHSRSRGYGGGSSHLPPSTWSDTGGYPPPPPPPSSG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03031 339 MobiDBLite consensus disorder prediction 260 339 - -
Vivi3g03031 339 MobiDBLite consensus disorder prediction 1 113 - -
Vivi3g03031 339 PANTHER DNA-BINDING DOMAIN 75 223 IPR044808 GO:0003700|GO:0009873
Vivi3g03031 339 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Vivi3g03031 339 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Vivi3g03031 339 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Vivi3g03031 339 SUPERFAMILY DNA-binding domain 112 170 IPR016177 GO:0003677
Vivi3g03031 339 MobiDBLite consensus disorder prediction 325 339 - -
Vivi3g03031 339 MobiDBLite consensus disorder prediction 1 31 - -
Vivi3g03031 339 MobiDBLite consensus disorder prediction 260 291 - -
Vivi3g03031 339 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Vivi3g03031 339 Gene3D AP2/ERF domain 111 171 IPR036955 GO:0003700|GO:0006355
Vivi3g03031 339 MobiDBLite consensus disorder prediction 45 102 - -
Vivi3g03031 339 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Vivi3g03031 339 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Vivi3g03031 339 CDD AP2 120 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03031 Vivi-Chr3 51370976 51373034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03031 67 215 AP2-EREBP Transcription Factor Family AT5G61890 50.331 2.65e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi3g03031 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03031 - - tpra:123903609 351.288