Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03023 ATGAATACTGAGGAAGGAATGGGCAATCCTGATGATAATACTGAATGTAGTGGAGGAGTTCAGGGTTTGAAACTCGAAGCTGTTTCTGATGAGGTGCCAATTTTAAATGGGGATGGTGTTGCCGAAGAGGCTCGGGGCTTGAAAAGTGAAGCCGTGAATGGTGATTGTTGTTTTGATATGGGAGCTGAGGAAGGAGTGAGCAGTCTCGGTGACACTAAATGTGCTGAAGGAATTCGGTGTTTGAAACGCAAAGCCATTTCTGATGAGGTACCAATTTCCAATGGGAATGGTGTTGCTGAAGAGGTTCGACATTTGAAAAGTGAAGCCGTGAATGATGGGGTGGTATTTGCCATCGGAAATGGTGTTGCTGATGTGGCCGGGGTTTTGAAAAGTGAAGTATTGAATAATGGGGTAAATGGGAATGGTGTATTTGAAGAGGCTCGACACTCGAAAAGTGAAGCCATGAGCAATGGGGTGGTATTTGGCTATGGAAATGAAGTTACTGATGTGGCTAGGGTTTTGAAAAGTGAAGCATCAAATAGTGCGTTTAATGTAAATGGTGTATTTGAAGAGGAACGGCACTTGAAAAGTGAAGACGTGAACAATGGGGTGGTATTTGCCAATGGAAATGGTGTTATTGATGTGGCTGGGGTTTTGGAAAGTAAAATATCGAGTAACGGGGTAAATGGAAATGGTGTATTTGTAGAGGATCGACACTCGAAAAGTGAAGCCATGAATGATGGGGTGGTACTAGCCAATGGAAATGGTATTACTGATGTGGCTGGGGATTTGAAAAGTGAAGTATTGAATAGTGGGGTGAATGAAAATGGTGTTATTGAAGAGGGCGGAGTTTTGAAAAGTGAACGCGTTAGCAATGGGGTGCCAATTGCAGATGGGTTTGATTCTGGCGAAGGGGGCTCTGGTGGACTTACTTGTCTTCTAACTTACAAGAGGCGGAAATATGATAAGTCAAGCTCAAAAGGCAAAGCTAAGGAGGATTGGAGAAAATGTATGGAAACTACAAGTCATATGGCAGACCAGGCTGTGAAGGAACCCTTTGATGCAACTTTGGGCAATACTGAAAATGATTGTGCCCATAGACATTGGGGGAATGATGTACTAAAGCATTCATATCAGTCATTAGGCAATGTCGATGGTGGCATAGAGGGGTGCATAGGGCAAGCACTAGTTCAGCATCCTCAAAGAAGTTGTGCCACCACAGTTATGCAGGGAACTTCTAAAATTGACAAAGATGGACATGGATTTTCTTCACAATTTGACTGCTTATCTCACAGACCACAGGCTGAAGCTAATGGGCACACACATGTCAAGCAAAATGGATCTTCTAGTGAACCCCATAACCATGGTGGGACTGAGAAGTGTCAGCGCTTGCTCCACGATATATTAAACTCAGAAAAATTCAATTCATTACGCAATACTTTACTTGAAAATTTCAAAGGAATAGAGCCTGAAAGCGTATTGGATTTTAGTATCGTGAACACAAGGATGAAGCAGAAAACTTATGAACCATCACCTGCACTTTTCTTGTCAGATATTCAACAGGTCTGGAGAAAGCTTCAAGATGTTGGTAACGAGATCTCTGCTCTTTCTAAAAGCCTCTCTATCATGTCAACAACTTTCTACTCTGAACTGGTTGGAGTTTCAGCGCAGAGCACATTTGAAGATGAAAAACAAGTTGAATTGGACTCACACATGAAACCGGAACAGACAGAAGAATGCACTACCTATAAAATTTGCTGTTGCAGTCGTTGTGGAGAAAGGGCAGATGGTACAGACTGTTTGGTGTGCGATTCATGTGAGAAGGTGTACCATTTGTCCTGTATTGAGCCTGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTACTAATTGCACCACCAGTGGCTTTGGATCTCCGCATGAGAATTGTGTAGTATGTACGAGGTTGAATGACGCAATGACTCCGAAGAAAATAATTGGTGATGAAAGCCTCACTACATATGAGGAAACACTTAATGGATTTGAAGAGAAATCAAATTACAGCTATGATGGGGTTCAAGTATCTAAAGGTGGGGAAAAAACACTGGATTGCAAAGTGTGCGGATATGAAGTCCTAGTTGATGGTGAAAAAATTAGAATATGTGGTCACCCTTTTTGCCCAAGTAATTACTACCATGTAAGGTGTTTGACAAGCAAGCAATTAAATTCATATGGTCGTTGGTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCCTCGTCGATCATGATGACGATCAAATTATCCTTTGTGATGGCTGTGATCATGCATATCACATCCATTGCATGAAGCCTCCTCTATCTTCTATTCCAAAAGGGAAATGGTTCTGCAAAAAATGTGATGCCGGAATCAAGGCAATATCCCAGGCAAAAAGGGCGTATGAGAATAACAAGCTGAGAATCGGTGAAAATGTTTCAAATCCAAGAGGTAATAATGAAAACAATTGCAACAATAAATGTGTAGAAGAATTGGAAAGTGTTGGAGGAATGGACATGCTTTTAACTGCCGCCAATTCTCTGAATTTCGAAGATAATTTAACCGAAAACCAGTTTGAGTAG 2598 0.4165 MNTEEGMGNPDDNTECSGGVQGLKLEAVSDEVPILNGDGVAEEARGLKSEAVNGDCCFDMGAEEGVSSLGDTKCAEGIRCLKRKAISDEVPISNGNGVAEEVRHLKSEAVNDGVVFAIGNGVADVAGVLKSEVLNNGVNGNGVFEEARHSKSEAMSNGVVFGYGNEVTDVARVLKSEASNSAFNVNGVFEEERHLKSEDVNNGVVFANGNGVIDVAGVLESKISSNGVNGNGVFVEDRHSKSEAMNDGVVLANGNGITDVAGDLKSEVLNSGVNENGVIEEGGVLKSERVSNGVPIADGFDSGEGGSGGLTCLLTYKRRKYDKSSSKGKAKEDWRKCMETTSHMADQAVKEPFDATLGNTENDCAHRHWGNDVLKHSYQSLGNVDGGIEGCIGQALVQHPQRSCATTVMQGTSKIDKDGHGFSSQFDCLSHRPQAEANGHTHVKQNGSSSEPHNHGGTEKCQRLLHDILNSEKFNSLRNTLLENFKGIEPESVLDFSIVNTRMKQKTYEPSPALFLSDIQQVWRKLQDVGNEISALSKSLSIMSTTFYSELVGVSAQSTFEDEKQVELDSHMKPEQTEECTTYKICCCSRCGERADGTDCLVCDSCEKVYHLSCIEPAVKEIPHKSWYCTNCTTSGFGSPHENCVVCTRLNDAMTPKKIIGDESLTTYEETLNGFEEKSNYSYDGVQVSKGGEKTLDCKVCGYEVLVDGEKIRICGHPFCPSNYYHVRCLTSKQLNSYGRWWYCPSCLCQVCLVDHDDDQIILCDGCDHAYHIHCMKPPLSSIPKGKWFCKKCDAGIKAISQAKRAYENNKLRIGENVSNPRGNNENNCNNKCVEELESVGGMDMLLTAANSLNFEDNLTENQFE 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03023 865 MobiDBLite consensus disorder prediction 439 455 - -
Vivi3g03023 865 SUPERFAMILY FYVE/PHD zinc finger 748 798 IPR011011 -
Vivi3g03023 865 SMART PHD_3 749 794 IPR001965 -
Vivi3g03023 865 SMART PHD_3 697 748 IPR001965 -
Vivi3g03023 865 SMART PHD_3 587 633 IPR001965 -
Vivi3g03023 865 ProSitePatterns Zinc finger PHD-type signature. 744 793 IPR019786 -
Vivi3g03023 865 FunFam PHD finger protein EHD3 isoform A 479 636 - -
Vivi3g03023 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 801 IPR013083 -
Vivi3g03023 865 MobiDBLite consensus disorder prediction 439 458 - -
Vivi3g03023 865 ProSiteProfiles Zinc finger PHD-type profile. 585 635 IPR019787 -
Vivi3g03023 865 CDD PHD1_Lid2p_like 749 793 - -
Vivi3g03023 865 SUPERFAMILY FYVE/PHD zinc finger 574 633 IPR011011 -
Vivi3g03023 865 Gene3D - 482 635 - -
Vivi3g03023 865 ProSiteProfiles Zinc finger PHD-type profile. 746 796 IPR019787 -
Vivi3g03023 865 PANTHER OS02G0192300 PROTEIN 567 660 - -
Vivi3g03023 865 Pfam PHD-finger 749 794 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03023 Vivi-Chr3 51254136 51262381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03023 748 815 C2H2 Transcription Factor Family AT3G01460 42.647 5.77e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g03023 PHD 2e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03023 - - psat:127082741 1347.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03023 3 51254136 51262381 Vivi3g03023 3 51254136 51262381 ECH