Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02980 ATGGATACTCCTCATTCTTCTTCTTGCATCATTGTTGCTTGTGATGCCACAAGGGACCGCAATGAGCACGAGATGAAGATCGTTATCGATCATGTTCGAGCCAGGGATATCATGCTCACTTCTGGTGACAGGTTGCTTGTGCTATGCATCTTGCATAAGGTGTCTCATCCCATGGGGTACCAGACATTAGCATCTCCTGAGGCTTTTGCCGGCACCAACTTTCGAGCAATGGAGGGAGAAGTCAGAAAAAAAGTGCATGGTTATGCGAATGTGCTTTTATCTACTCTTGAAGATTTTGATATCCAAGGGGTTACTGTTGACATTCAAGTCACCGCGGGTTTTCCAATCAGACAGGTTATTTTACAAGAGATTAAGAACTATAATGGATCTTGGATTGTACTTGATAGACACCTTCGGCGCGACATGAGATACCATCTTAACAAGATACCATGTAAGGTAGCATTGGTTAAAGATGATTTGTCCGTGGATATATGGAGATCTCACAATGCTCATGACACAAATGTCACAGCAACCAAGCCGGTCTTTTCTTTGTCCAAGTTTGTATCATTATCAGATTGCCATAGTATACAAGATATTGAGCAGTCTATTATCTCTTGCAAAAGTTATCCACATTCCTTAGCTTCTTCTGATAGCTCTGGTACTATTAAGAGCTATTCAACGCATTCTTATGCCAACAGTTCATTACATTCTGGATCTTCTTCTAAACATGAAAGATCAGGTCAGGATCGTACAAGCATCAAAGGAGAGTATAGACATCTCATTACATCTCAGATTGGTCAAAAGCAAAACCAAAGTGGTTTTCTACCAAAATCTTCAGATGCACCAATTCTATGTGTAGGCTGTGGAATAAGGACAGAGTTATCTATCAAAGAGTCCAACAGGTTCAGCTACTCTGAAATACAGGTTGCAACAAATGACTTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGCCATGTATATAAGGGTGTGCTTAAAGACGGGCAGCAAATTGCTGCAAAAGTAAGGAAAGAAGAAAGTGCACAAGGATTTTCTGAATTCCATTCGGAGGTTTATATCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTGGGTTACTGTTGCAAAGAAAATAAAAATATTCTCATATATGAATATATTTGTAATAAGTCTCTTCATTGGCATTTATTCGAAAATAATGATGCGGTTCTTGATTGGCCTCAAAGATACGGCATTGCACTCGGGACTGCAAAGGGGTTGCGATTTTTACACGAAGAATGTAGAGGTGGTCCTATTATTCATAGGGACATGCGACCGAGCAATATACTTCTCACTCATGATTTTGTTCCCATGCTAGGTGATTTTGGCCTTGCGAAATGGATTACAAGTGGCGATCCTCTTGAAACAAGGATAATGGGCACATTAGGATACCTTGCTCCCGAGTATGCTGAAGATGGCATAGTTTCTGAAGGGACAGATGTGTATTCTTATGGCGTTACTTTGTTACAATTGATATCAGGGCGTCAAGTGGGTAATCCAGATCAGCAACAACAATCTCTTCGACAATGGGCTGAACCAATGATTGAGAAATTGGCTTTACAAGAACTGATTGATCCGCGTTTGGGAGAATCTTATGACACATATGAACTATACCTTATGGCTAAAGCAGCAAATTTCTGCATGCAAAGGAACCCCGAGATGCGTCCGTCAATGAGAGAGGTATCTTCATTTCATTACTTTGGCCTTAATTCTACATCAAGGGAAATTTATACTAATGATTAA 1791 0.4003 MDTPHSSSCIIVACDATRDRNEHEMKIVIDHVRARDIMLTSGDRLLVLCILHKVSHPMGYQTLASPEAFAGTNFRAMEGEVRKKVHGYANVLLSTLEDFDIQGVTVDIQVTAGFPIRQVILQEIKNYNGSWIVLDRHLRRDMRYHLNKIPCKVALVKDDLSVDIWRSHNAHDTNVTATKPVFSLSKFVSLSDCHSIQDIEQSIISCKSYPHSLASSDSSGTIKSYSTHSYANSSLHSGSSSKHERSGQDRTSIKGEYRHLITSQIGQKQNQSGFLPKSSDAPILCVGCGIRTELSIKESNRFSYSEIQVATNDFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKEESAQGFSEFHSEVYILSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENNDAVLDWPQRYGIALGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWITSGDPLETRIMGTLGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRQVGNPDQQQQSLRQWAEPMIEKLALQELIDPRLGESYDTYELYLMAKAANFCMQRNPEMRPSMREVSSFHYFGLNSTSREIYTND 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02980 596 SUPERFAMILY Protein kinase-like (PK-like) 298 583 IPR011009 -
Vivi3g02980 596 Pfam Protein kinase domain 315 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02980 596 PANTHER OS01G0253100 PROTEIN 229 578 - -
Vivi3g02980 596 CDD STKc_IRAK 320 577 - -
Vivi3g02980 596 Gene3D Phosphorylase Kinase; domain 1 288 389 - -
Vivi3g02980 596 ProSitePatterns Tyrosine protein kinases specific active-site signature. 435 447 IPR008266 GO:0004672|GO:0006468
Vivi3g02980 596 Gene3D Transferase(Phosphotransferase) domain 1 391 586 - -
Vivi3g02980 596 ProSiteProfiles Protein kinase domain profile. 314 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02980 596 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 287 389 - -
Vivi3g02980 596 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02980 Vivi-Chr3 49759200 49762572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02980 302 577 Trihelix Transcription Factor Family AT5G38560 45.263 5.84e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vivi3g02980 Pkinase 2.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02980 - - vun:114163670 925.62