Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02956 ATGGATGATTCTTCCTCAGCTGCTGAAGAATCCAAAACTTGTCCCCGTGGTCACTGGAGACCTGCTGAAGATGAAAAGCTTCGCCAACTTGTTGAACAATATGGTGCTCAAAATTGGAATTCTATTGCAGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGTAGGTTAAGATGGTTCAATCAGTTAGATCCAAGAATTAACAGAAGACCTTTCACAGAAGAGGAAGAAGAGAGACTACTCGCGGCGCATCGTATTCACGGAAACAAATGGGCACTAATAGCCAGGCTTTTTCCAGGTAGAACTGATAATGCTGTGAAGAATCATTGGCATGTTATTATGGCAAGAAAACAAAGGGAACAATCTAAATTATGTGGTAAAAGAACCTTTCAAGAAGTTTTCAATAACTCCTCAATTCTTAATTTTCCTTATACAACAAGAAATATTGGATATGAGAATGGAAAATTCTTTGATACTAGTACTTCTTCTTCAAACTCTCTAGCTTCTTGGAATTTTGCTTCTGTGCCGACATCGATAACAAACACTACTACTTCTCTTGTTTTGGATAGTTCGATTACGAAAAAAGGATCGAATATTTATAGAGGCTCTGATAGATCATTTCTCTATAGAATTTGTCCAAATCTTCCAAGCTACAAGAGAGTTGTTTCAAATCCTTTTAGTTTTTTGAGTTCGGATGGCGAAGGAAGGGTTAGGAATTCGGATAATTTGATGAGTAGTTTATGCGATAAATCGTCGATGTTGATCACAAACATAAAGTCTTCCAAGGAGAAAGAGTTGCAAGAAGATCATCATGAAGCTGAACAGCACAAAGAAGTTCCTTTTATTGATTTTCTTGGTGTTGGTGTTTCTTCATCATAA 876 0.3699 MDDSSSAAEESKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRTFQEVFNNSSILNFPYTTRNIGYENGKFFDTSTSSSNSLASWNFASVPTSITNTTTSLVLDSSITKKGSNIYRGSDRSFLYRICPNLPSYKRVVSNPFSFLSSDGEGRVRNSDNLMSSLCDKSSMLITNIKSSKEKELQEDHHEAEQHKEVPFIDFLGVGVSSS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02956 291 Gene3D - 16 67 - -
Vivi3g02956 291 SMART sant 67 115 IPR001005 -
Vivi3g02956 291 SMART sant 15 64 IPR001005 -
Vivi3g02956 291 FunFam MYB transcription factor 69 138 - -
Vivi3g02956 291 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Vivi3g02956 291 PANTHER MYB PROTEIN-RELATED 16 254 - -
Vivi3g02956 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi3g02956 291 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g02956 291 Gene3D - 70 130 - -
Vivi3g02956 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi3g02956 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Vivi3g02956 291 CDD SANT 79 110 IPR001005 -
Vivi3g02956 291 CDD SANT 19 60 IPR001005 -
Vivi3g02956 291 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Vivi3g02956 291 FunFam MYB transcription factor 16 67 - -
Vivi3g02956 291 Pfam Myb-like DNA-binding domain 19 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02956 Vivi-Chr3 49331447 49333178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02956 14 123 MYB Transcription Factor Family AT1G17950 84.545 2.82e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g02956 Myb_DNA-bind_6 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02956 K09422 - gmx:100817328 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02956 3 49331447 49333178 Vivi3g02956 3 49331447 49333178 ECH
Vivi3g02956 3 49331447 49333178 Vivi3g02956 3 49331447 49333178 PCT