Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02954 ATGTATATGACAGATACTTACTCGATCGAGAGTTACGAGAAGTACTTCCTTGACTCACAAACGGAAGAACTCGTAGAAATGTCTAGTTCCAACATTTCTACAAGTTCAATTCATCCAGATGGTGCTTCAGTGGTTACTAATAACCCATTTGATAGTTGTGTGATGATGGAAAATCGAGGCGCGGATTCAATTGAAGTGGACGGAGTAATGAGATCAAAACTAGAAGCCTTGGAGAGAGCTTTACTTGAGGATAGTGACATTGAGGCGGAAGAGGAATATGATGACTCTCGATGCATGGAAATCGATTGGGCTGATCATGATCCGATTCAGAACATGCTGCTTCTCGATGACCATGACTCGCCAAAGGAGTATTCATCTTCGGATTCAAACGTTAGTAGCATTCGTAGCACCGCAAAAGAAATAAGAAAAATCTATAGGACTCCCAAGCAACTGCTCTATGAATGTGCTACTGCAATTTCAGAAGGAAATGACGAGGAAGCATCGTCGATGATAAACAATCTGCGACAGATGGTATCGATTCAAGGAGAGCCTTCTCAGAGAATTGCAGCCTATATGGTGGAGGGACTTGCAGCTCGCCTAGCTGAATCGGGTAAAAGTATATATAGAGCCTTGAAATGCAAGGAACCTCCTTCTTCAGACCGTCTAGCCGCGATGCAGATACTCTTTGAGGTTTGTCCGTGTTTTAAATTCGGGTTTATTGCTGCAAACAATGCAATTACAGAAGCTGTTAAAGATGAAATGAGGATTCATATCATAGATTTCGACATCAATCAAGGAAGTCAGTACATAAACCTTATTCAAACACTTGCATTGAGATCTTGTAAGCCCTCACATGTTAGATTGACCGGGATCGACGATCCTGAATCCGTGCAGCGATCCGTTGGAGGACTAAATATCATAGGACAAAGACTAGAAAAACTAGCAGAAGCGCTCGGATTGTCATTTGAGTTTCGGGCAGTCTCGTCCAGGGCTTCCGTTGTCACCTCATCAATGCTCAGCTCCCGTCGTGGAGAAGCCCTTGTTGTGAACTTTGCATTCCAGCTTCATCACATGCCCGACGAGAGCGTTTCAACGGTAAACGAACGAGACCAACTTCTTCGCTTGGTAAAGAGCTTGAATCCGAGGATTGTAACGGTCGTGGAGCAAGATGTGAACACAAATACCGCGCCATTCTTGCAGAGATTTGTTGAAGCTTATAACTACTACTCTGCTGTTTTTGAGTCACTTGATGTTACTCTTCCTAGAGAGAGTCAAGATAGGATGAATGTTGAGAGGCAATGCTTAGCAAGGGACATTGTTAATACAGTAGCGTGTGAAGGCGAGGATCGGATAGAACGGTATGAAGTCGCGGGGAAATGGAGAGCTAGGATGACAATGGCGGGATTTACTTCATCGCCGATGAGCGCAAATGCGAGCGATGAAATCAGAAAACTAGTTAAGGTGTACTGTGATAGGTATAAGGTAAAGGAGGAAAAGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCGGCATGGAGGTGA 1557 0.4387 MYMTDTYSIESYEKYFLDSQTEELVEMSSSNISTSSIHPDGASVVTNNPFDSCVMMENRGADSIEVDGVMRSKLEALERALLEDSDIEAEEEYDDSRCMEIDWADHDPIQNMLLLDDHDSPKEYSSSDSNVSSIRSTAKEIRKIYRTPKQLLYECATAISEGNDEEASSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALKCKEPPSSDRLAAMQILFEVCPCFKFGFIAANNAITEAVKDEMRIHIIDFDINQGSQYINLIQTLALRSCKPSHVRLTGIDDPESVQRSVGGLNIIGQRLEKLAEALGLSFEFRAVSSRASVVTSSMLSSRRGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPRIVTVVEQDVNTNTAPFLQRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSANASDEIRKLVKVYCDRYKVKEEKGALHFGWEDKNLIVASAWR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02954 518 Pfam GRAS domain family 149 518 IPR005202 -
Vivi3g02954 518 ProSiteProfiles GRAS family profile. 139 518 IPR005202 -
Vivi3g02954 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 125 513 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02954 Vivi-Chr3 49245078 49247713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02954 5 518 GRAS Transcription Factor Family AT1G21450 59.669 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi3g02954 GRAS 8.3e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02954 - - gmx:100788103 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02954 3 49245078 49247713 Vivi3g02954 3 49245078 49247713 ECH