Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02938 ATGTCGAGTACTGCTGGTCAAGTCATCAAATGCAAAGCTGCTGTTGCATGGGAGGCTGGGAAGCCGCTGGTGATTGAAGAAGTAGAGGTGGCGCCACCACAGGCCGGTGAAGTTCGTCTCAAGATTCTCTTCACCTCCCTTTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAAACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACCCATCTTAAACCAGGAGATCAAGCCCTGCCAGTATTCACAGGGGAATGTGGGGATTGTCCACATTGCAAGTCAGAGGAAAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGACAACAAATCTAGATTCTCTATAAACGGACAGCCAATTAATCATTTCGTCGGTACCTCTACATTCAGTGAGTACACTGTGGTTCATGCTGGTTGTGTTGCAAAGATCAACCCTGATGCACCACTTGACAAAGTCTGCATTCTCAGTTGTGGAATCTGCACAGGTCTTGGAGCTACTGTGAATGTTGCAAAACCAAAACCAGGCTCTTCTGTTGCTATCTTTGGACTTGGTGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGAATTTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTCTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGAAAGATCACGATAAACCTGTACAACAGGTTATTGCTGAATTGACTAATGGAGGCGTAGATCGCGCTGTTGAATGTACTGGTAGCTACCAAGCTATGATCTCAGCATTTGAATGTGTACATGATGGTTGGGGTACTGCGGTACTAGTTGGAGTTCCAAACAAAGATGATGCATTCAAAACTCATCCTATGAATTTCTTGAATGAGAGGACTCTTAAGGGAACTTTCTATGGCAACTACAAACCTCGCACTGATCTTCCTAATGTTGTTGAGAAGTACATGAAAGGGGAGCTGGAACTTGAGAAATTCATTACTCACACTGTACCATTCTCAGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGGGAGTCTATTAGGTGTATCATAAGAATGGAGGAATAA 1143 0.4444 MSSTAGQVIKCKAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDQALPVFTGECGDCPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGQPINHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKPVQQVIAELTNGGVDRAVECTGSYQAMISAFECVHDGWGTAVLVGVPNKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMEE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02938 380 CDD alcohol_DH_plants 9 377 - -
Vivi3g02938 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Vivi3g02938 380 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Vivi3g02938 380 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Vivi3g02938 380 Gene3D - 19 370 - -
Vivi3g02938 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vivi3g02938 380 Gene3D - 183 321 - -
Vivi3g02938 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Vivi3g02938 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Vivi3g02938 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Vivi3g02938 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Vivi3g02938 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02938 Vivi-Chr3 49005289 49007551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02938 1 370 Monolignol Biosynthesis Gene Families AT1G72680 24.397 3.30e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02938 K18857 - gmx:100783858 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02938 3 49005289 49007551 Vivi3g02938 3 49005289 49007551 ECH
Vivi3g02938 3 49005289 49007551 Vivi3g02932 3 48902402 48905228 PCT