Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02937 ATGTCGTCGAAAACTGTTGGTCAAGTCATCAAGTGCAGAGCTGCGATTGCATGGGAGGCTGGGAAGCCGCTGGTGATTGAAGAAGTAGAGGTGGCGCCACCACAAGCCGGTGAAGTTCGTCTCAGGATACTCTACACCTCCCTTTGCCATTCAGATGTTTACTTTTGGGAAGCTAAGGGTCAAACTCCATTGTTTCCTCGTATACTAGGTCATGAAGCTGCCGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATTTGAAACCAGGAGATCAAGCCCTGCCAGTATTCACAGGAGAGTGTGGGGATTGTCCACATTGTCATTCAGAGGAGAGCAACCTGTGTGATCTTCTCAGAATCAACACTGAAAGAGGTGTCATGCTCAACGACAACAAGTCTAGATTCTCTATCAAGGGACAGCCCATACATCATTTCGTCGGTACTTCCACATTCAGCGAGTACACTGTGGTTCATGCTGGATGTGTAGCAAAGATCAACCCTGATGCACCCCTTGACAAAGTTTGCATTCTCAGTTGTGGATTCTGCACTGGTTTTGGTGCTACTGTGAATGTTGCAAAACCAAAACCAGGCTCTTCTGTTGCTATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATCTCTGGTGCATCAAAAATCATTGGAGTTGATTTGTTCCCCAGCCGATTTGAATTAGGTACATTCTTTTTATCTTCCATCAAATGCTTTAAGATTGTGGTCAACATAAATTCAATGCCTATTCTTTTATGGAAGACATTTCTTATGATTTTCTTGTTCGCAGCTAAGAAGTTTGGGGTAACCGATTTCATAAACCCGAAAGATCATGACAAGCCTGTTCAACAAGTAATAGCTGAAATGACGAATGGAGGTGTGGATCGTGCTGTTGAATGTTCCGGTAGCATTCAGGCTATGATCTCAGCATTCGAAAGTGTCCACGATGGTTGGGGTGTTGCGGTACTTGTTGGACTTTCAAAAAAAGATGATGCCTTCAAAACTCATCCTATGAACTTCTTGAATGAAAGGACTCTGAAGGGTACCATCTATGGAAACTACAAACCCCGCACTGATCTTCCTAATGTTGTTGAGAAGTACATGAAAGGAGAGCTGGAACTGGAGAAATTCATTACACACAAAATACCATTTTCAGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGAGAGTCCATCAGATGTATCATCAAAATGGATGAGTAA 1251 0.4388 MSSKTVGQVIKCRAAIAWEAGKPLVIEEVEVAPPQAGEVRLRILYTSLCHSDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTHLKPGDQALPVFTGECGDCPHCHSEESNLCDLLRINTERGVMLNDNKSRFSIKGQPIHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGFCTGFGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASKIIGVDLFPSRFELGTFFLSSIKCFKIVVNINSMPILLWKTFLMIFLFAAKKFGVTDFINPKDHDKPVQQVIAEMTNGGVDRAVECSGSIQAMISAFESVHDGWGVAVLVGLSKKDDAFKTHPMNFLNERTLKGTIYGNYKPRTDLPNVVEKYMKGELELEKFITHKIPFSEINKAFDYMLKGESIRCIIKMDE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02937 416 FunFam alcohol dehydrogenase 1-like isoform X1 20 183 - -
Vivi3g02937 416 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
Vivi3g02937 416 FunFam S-(hydroxymethyl)glutathione dehydrogenase 269 357 - -
Vivi3g02937 416 CDD alcohol_DH_plants 10 412 - -
Vivi3g02937 416 Gene3D - 15 409 - -
Vivi3g02937 416 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Vivi3g02937 416 PANTHER ALCOHOL DEHYDROGENASE 7 412 - -
Vivi3g02937 416 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 177 361 IPR036291 -
Vivi3g02937 416 Pfam Zinc-binding dehydrogenase 271 372 IPR013149 -
Vivi3g02937 416 Gene3D - 184 357 - -
Vivi3g02937 416 SUPERFAMILY GroES-like 365 412 IPR011032 -
Vivi3g02937 416 SUPERFAMILY GroES-like 5 187 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02937 Vivi-Chr3 48995155 48998384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02937 38 200 Monolignol Biosynthesis Gene Families AT4G37990 25.749 1.21e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02937 K18857 - gmx:100801918 677.552