Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02936 ATGTCGTCGAAAACTGTTGGTCAAGTCATCAAGTGCAGAGCTGCGATTGCATGGGAGGCTGGGAAGCCGCTGGTGATTGAAGAAGTAGAGGTGGCGCCACCACAAGCCGGTGAAGTTCGTCTCAGGATACTCTACACCTCCCTTTGCCATTCAGATGTTTACTTTTGGGAAGCTAAGGGTCAAACTCCATTGTTTCCTCGTATACTAGGTCATGAAGCTGCCGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATTTGAAACCAGGAGATCAAGCCCTGCCAGTATTCACAGGAGAGTGTGGGGATTGTCCACATTGTCATTCAGAGGAGAGCAACCTGTGTGATCTTCTCAGAATCAACACTGAAAGAGGTGTCATGCTCAACGACAACAAGTCTAGATTCTCTATCAAGGGACAGCCCATACATCATTTCGTCGGTACTTCCACATTCAGCGAGTACACTGTGGTTCATGCTGGATGTGTAGCAAAGATCAACCCTGATGCACCCCTTGACAAAGTTTGCATTCTCAGTTGTGGATTCTGCACTGGTTTTGGTGCTACTGTGAATGTTGCAAAACCAAAACCAGGCTCTTCTGTTGCTATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATCTCTGGTGCATCAAAAATCATTGGAGTTGATTTGTTCCCCAGCCGATTTGAATTAGCTAAGAAGTTTGGGGTAACCGATTTCATAAACCCGAAAGATCATGACAAGCCTGTTCAACAAGTAATAGCTGAAATGACGAATGGAGGTGTGGATCGTGCTGTTGAATGTTCCGGTAGCATTCAGGCTATGATCTCAGCATTCGAAAGTGTCCACGATGGTTGGGGTGTTGCGGTACTTGTTGGACTTTCAAAAAAAGATGATGCCTTCAAAACTCATCCTATGAACTTCTTGAATGAAAGGACTCTGAAGGGTACCATCTATGGAAACTACAAACCCCGCACTGATCTTCCTAATGTTGTTGAGAAGTACATGAAAGGAGAGCTGGAACTGGAGAAATTCATTACACACAAAATACCATTTTCAGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGAGAGTCCATCAGATGTATCATCAAAATGGATGAGTAA 1146 0.4511 MSSKTVGQVIKCRAAIAWEAGKPLVIEEVEVAPPQAGEVRLRILYTSLCHSDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTHLKPGDQALPVFTGECGDCPHCHSEESNLCDLLRINTERGVMLNDNKSRFSIKGQPIHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGFCTGFGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASKIIGVDLFPSRFELAKKFGVTDFINPKDHDKPVQQVIAEMTNGGVDRAVECSGSIQAMISAFESVHDGWGVAVLVGLSKKDDAFKTHPMNFLNERTLKGTIYGNYKPRTDLPNVVEKYMKGELELEKFITHKIPFSEINKAFDYMLKGESIRCIIKMDE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02936 381 FunFam Alcohol dehydrogenase class-P 184 322 - -
Vivi3g02936 381 SMART PKS_ER_names_mod 21 377 IPR020843 GO:0016491
Vivi3g02936 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Vivi3g02936 381 FunFam alcohol dehydrogenase 1-like isoform X1 20 183 - -
Vivi3g02936 381 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
Vivi3g02936 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 344 IPR036291 -
Vivi3g02936 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Vivi3g02936 381 Gene3D - 184 322 - -
Vivi3g02936 381 SUPERFAMILY GroES-like 329 377 IPR011032 -
Vivi3g02936 381 CDD alcohol_DH_plants 10 377 - -
Vivi3g02936 381 Gene3D - 20 371 - -
Vivi3g02936 381 PANTHER ALCOHOL DEHYDROGENASE 7 377 - -
Vivi3g02936 381 Pfam Zinc-binding dehydrogenase 207 337 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02936 Vivi-Chr3 48995155 48998384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02936 38 371 Monolignol Biosynthesis Gene Families AT1G72680 24.332 2.53e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02936 K18857 - gmx:100801918 694.501