Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02931 ATGTCGAACACTGTTGGTCAGGTTATCAATTGTAGAGCTGCGGTTGCATGGGAGGCTGGGAAGCCTCTGGTGATGGAAGAAGTAGAGGTGGCGCCTCCACAGGCCGGAGAAGTTCGTCTCAAGATACTCTTCACCTCCCTTTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCTTTGTTTCCTCGAATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGTGTAGGTGAGGGTGTGACACATCTTAAACCAGGGGATCATGCTCTGCCAGTATTCACAGGGGAGTGTGGGGAATGTCCACATTGTAAGTCAGAGGAAAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGACAACAAATCTAGATTCTCTATTAAGGGACAACCTGTACACCATTTCGTTGGTACCTCTACATTTAGCGAGTACACTGTGGTACATGCTGGATGTGTTGCAAAGATCAACCCTGATGCACCACTTGACAAAGTTTGTATTCTCAGCTGTGGAATATGCACAGGTCTTGGTGCTACCATCAATGTTGCAAAACCAAAACCTGGCTCTTCAGTTGCTATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGGTACAATGCTTTCTTTGTCTCCTAAATCCTTGAAGTTTTGGATCAACATAATTTCAATGAATGTTCTTTTCATGATGGTGTTTCTTATTCTTTTCTTGTTGGCAGCTAAGAAGTTTGGGGTTAATGAGTTTGTAAACCCAAAAGAGCATGACAAACCTGTGCAACAGGTAATTGCCGAAATGACAAATGGAGGTGTAGATCGAGCTATTGAATGTACCGGTAGCATCCAGGCCATGATCTCAGCTTTTGAATGTGTCCATGATGGTTGGGGTCTTGCTGTACTAGTTGGAGTGCCAAGTAAAGATGATGCATTCAAAACTCATCCTATGAACTTCTTGAATGAAAGGACACTTAAGGGTACCTTCTATGGAAACTACAAACCCCGCACCGATCTTCCTAATGTTGTAGAGAAGTACATGAAAGGAGAGCTGGAACTGGAGAATTTCATTACACACAGAATACCATTTTCAGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGAGAGTCCATCAGATGTATCATCAATATGGAGGAGTAA 1248 0.4351 MSNTVGQVINCRAAVAWEAGKPLVMEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELGTMLSLSPKSLKFWINIISMNVLFMMVFLILFLLAAKKFGVNEFVNPKEHDKPVQQVIAEMTNGGVDRAIECTGSIQAMISAFECVHDGWGLAVLVGVPSKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELENFITHRIPFSEINKAFDYMLKGESIRCIINMEE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02931 415 FunFam S-(hydroxymethyl)glutathione dehydrogenase 268 356 - -
Vivi3g02931 415 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 360 IPR036291 -
Vivi3g02931 415 SUPERFAMILY GroES-like 364 411 IPR011032 -
Vivi3g02931 415 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vivi3g02931 415 Pfam Zinc-binding dehydrogenase 270 371 IPR013149 -
Vivi3g02931 415 SUPERFAMILY GroES-like 4 186 IPR011032 -
Vivi3g02931 415 Gene3D - 14 408 - -
Vivi3g02931 415 Gene3D - 183 356 - -
Vivi3g02931 415 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Vivi3g02931 415 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Vivi3g02931 415 CDD alcohol_DH_plants 9 411 - -
Vivi3g02931 415 PANTHER ALCOHOL DEHYDROGENASE 6 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02931 Vivi-Chr3 48902402 48905233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02931 37 414 Monolignol Biosynthesis Gene Families AT1G72680 23.560 6.77e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02931 K18857 - gmx:100801918 704.901