Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02928 ATGGGAAAGTGTTGGTTTGTTGGTGTCTTGATTCTTTTAGGTTATGTATGCTTGTTGGGTAATATTTTTAGGGTAGAAGGGTACCCTATTGAAGATTTGGTTGAGAGGTTACCAGGACAACCTAAGGTTAAATTTAGTCAATATGCTGGCTATGTTGATATAGATGTAAAGCATGGGAGGAGTCTCTTCTACTATTTTGTCGAGGCTGAGCATCATGCTCACAAAAAACCCCTGACCCTTTGGCTCAATGGAGGTCCGGGATGTTCTTCCATCGGAGGAGGTGCTTTTACTGAATTAGGACCATTTTATCCCAAGGGTGATGGACGTGGTTTACGGAGGAATTCAAAGTCTTGGAATAAAGTTTCAAATCTTCTGTTTGTGGAGTCTCCTGCTGGAGTTGGATGGTCATACTCAAATACAACTTCTGATTATATCATTGGTGATGATGCAACAGCCAATGATATGGTTTTGTTCTTGCTGAAATGGTACAAGAAATTCCCTTCTTATCGATCAAGAAAGTTGTTTTTGACTGGAGAAAGCTATGCAGGACATTACATCCCACAGTTAGCTAATGCTATTCTTGATTATAATCTTCTTCACTCAAATGGTTTCAAATTCAATATAAAAGGACTCGCGATCGGAAACCCTCTTCTGAAATTGGATCGTGATACACAGGCAACATATGAATATTTCTGGTCACACGGAATGATTTCAGATGAAATCGGTCTTGCTCTTACGCGTGATTGTGATTTTGATGATTATACTTATGCAAATCCTCATAACATATCCAAATCATGCAATGATGCTATAAATGATGCTAATAAAATTGTTGGCCAGTATATAAACTACTATGATGTGATTCTTGATGTTTGTTATCCATCCATAGTTCAACAAGAACTGAAACTGAAAAAAATGGCTACTAAAATAAGTTTAAGTGTAGATGTTTGTTTGGACTATGAAAGTGATTTTTACCTTAATCTGCCGGAAGTTCAAAAGGCTCTTCATGCTAATCGTACCAGTTTGCCATATTCATGGTCCATGTGTAGTGATATTTTAAATTATAGTTTATCAGATCCTAATATTGACATGCTTCCAAGTTTGAAACGGATAGTGCAGAATCATATTCCAATATGGATTTACAGTGGAGACCAAGATTCAGTTGTGCCATTACTAGGTACTCGAACACTCATTCGTGAACTAGCTCATGACTTGAAATTCAATATTACTGATCCATATAGAGTTTGGTTTCACAAAGGACAGGTTGGAGGTTGGGTAACTGAGTATGGAAAATTGTTAACTTTTGCCACTGTAAGAGGAGCTGGTCACATGGTACCATATGGACAACCTTCAAGATCATTGCATCTATTTCAATCCTTTTTGAGTGGGAGGAGATTGCCAAATACTACTCGACCTTCGATTGATGAATGA 1428 0.3761 MGKCWFVGVLILLGYVCLLGNIFRVEGYPIEDLVERLPGQPKVKFSQYAGYVDIDVKHGRSLFYYFVEAEHHAHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRRNSKSWNKVSNLLFVESPAGVGWSYSNTTSDYIIGDDATANDMVLFLLKWYKKFPSYRSRKLFLTGESYAGHYIPQLANAILDYNLLHSNGFKFNIKGLAIGNPLLKLDRDTQATYEYFWSHGMISDEIGLALTRDCDFDDYTYANPHNISKSCNDAINDANKIVGQYINYYDVILDVCYPSIVQQELKLKKMATKISLSVDVCLDYESDFYLNLPEVQKALHANRTSLPYSWSMCSDILNYSLSDPNIDMLPSLKRIVQNHIPIWIYSGDQDSVVPLLGTRTLIRELAHDLKFNITDPYRVWFHKGQVGGWVTEYGKLLTFATVRGAGHMVPYGQPSRSLHLFQSFLSGRRLPNTTRPSIDE 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02928 475 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vivi3g02928 475 FunFam Carboxypeptidase 363 462 - -
Vivi3g02928 475 FunFam Carboxypeptidase 313 465 - -
Vivi3g02928 475 ProSitePatterns Serine carboxypeptidases, histidine active site. 432 449 IPR033124 GO:0004185
Vivi3g02928 475 Pfam Serine carboxypeptidase 39 462 IPR001563 GO:0004185|GO:0006508
Vivi3g02928 475 Gene3D - 363 462 - -
Vivi3g02928 475 FunFam Carboxypeptidase 28 293 - -
Vivi3g02928 475 SUPERFAMILY alpha/beta-Hydrolases 35 465 IPR029058 -
Vivi3g02928 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Vivi3g02928 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Vivi3g02928 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vivi3g02928 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Vivi3g02928 475 Gene3D alpha/beta hydrolase 30 292 IPR029058 -
Vivi3g02928 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 449 IPR001563 GO:0004185|GO:0006508
Vivi3g02928 475 Gene3D - 316 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02928 Vivi-Chr3 48804797 48810707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02928 321 465 Calmodulin-binding Proteins AT2G22960 31.081 2.00e-15 72.8