Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02922 ATGGAAAAGTGTTGGTTAGTTGGTTTGTTGATTGTTTTAGGTTATATGTGCTTGTTGAGTACTTCTTTTGGAGTAGAAGGGTACCCTATTGAGGATTTGGTTGAGAGGTTACCAGGGCAACCCAATGTTAACTTTAGACAATATGCTGGCTATGTTGATATTGATGTAAAGCATGGGAGGAGTCTCTTCTATTATTTTGTTGAGGCTGATCATCTCCCTCACAAAAAGCCTCTCACCCTTTGGCTTAATGGAGGTCCGGGATGTTCTTCTATCGGAGGAGGCGCGTTTAGTGAATTAGGTCCATTTTATCCTACCGGTGATGGACGTGGTTTAAGAAATAATCCAGAATCTTGGAATAAAGCTTCAAATCTTCTGTTTGTGGAGTCTCCTGCTGGAGTTGGCTGGTCATACTCAAATACAACTTCGGATTATACCAAAAATGATGCCTCCACAGCTAATGATATGCTTTTGTTCATGCTAAAATGGTATGAGAAATTTCCTTCATACAAATCAAAGGAGTTATTTCTTACAGGAGAAAGCTATGCAGGACATTACATACCTCAGTTAGCTAAAGTTCTTATTGATTATAATACTCATTCAACTGGTTTCAAATTCAATATAAAAGGAGTTGCTATTGGAAACCCTCTTCTAAATTTCAATCGTGATACACAAGCAACATATGAATATTTATGGTCACATGGAATGGTTTCTGATGAAATTTATCTTTCTCTTAAGAATGAATGTGATTTTAATGTAAGTTATGACAACTTATCTAAATCATGTAAAGATGCTATGATTGATGTACAAGGAATTGTGAGTGACTATGTAGACAACTACGATGTGATTCTTGATGTTTGTTATCCATCTATAGCTCAACAAGAACTAAGATTGAAAAAAATGGCTACTAAAATAAGTTACAACATAGATGTTTGTATGGACTATGAAGTTGATATTTATCTCAATCTTCCGGATGTTCAGAAGACTCTTCATGCTAATCGCACCAATTTATCATATCCATGGTCTCAATGCAGTAGTGTTTTAGATTATTATGCACTGGATCATGATATAAATATCCTTCCAGTTCTGAAATGGATAGTACAAAACCATATTCCTCTATGGGTTTATAGTGGAGATCAAGATTCAATCGTGCCATTATTAAGTAGTCGTACATTTATCCGTGAGCTAGCAAATGACCTAAAGTTCAAGATTACAGATCCATATAGAGTTTGGTTTCACAAAGGCCAGGTTGGAGGTTGGGTAACTGAGTATGGAAATTTATTGACATTTGCATCTGTAAGAGGAGCTGGTCACATGGTGCCATATACACAACCTTCAAGAGCATTGCACCTATTTAGTTCAGTTGTAAGTGGCAGGAGATTGTCAAACACTACTCAGCCTTCAATTATTGATGAAATCTCCAAGTAA 1425 0.3628 MEKCWLVGLLIVLGYMCLLSTSFGVEGYPIEDLVERLPGQPNVNFRQYAGYVDIDVKHGRSLFYYFVEADHLPHKKPLTLWLNGGPGCSSIGGGAFSELGPFYPTGDGRGLRNNPESWNKASNLLFVESPAGVGWSYSNTTSDYTKNDASTANDMLLFMLKWYEKFPSYKSKELFLTGESYAGHYIPQLAKVLIDYNTHSTGFKFNIKGVAIGNPLLNFNRDTQATYEYLWSHGMVSDEIYLSLKNECDFNVSYDNLSKSCKDAMIDVQGIVSDYVDNYDVILDVCYPSIAQQELRLKKMATKISYNIDVCMDYEVDIYLNLPDVQKTLHANRTNLSYPWSQCSSVLDYYALDHDINILPVLKWIVQNHIPLWVYSGDQDSIVPLLSSRTFIRELANDLKFKITDPYRVWFHKGQVGGWVTEYGNLLTFASVRGAGHMVPYTQPSRALHLFSSVVSGRRLSNTTQPSIIDEISK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02922 474 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vivi3g02922 474 FunFam Carboxypeptidase 28 288 - -
Vivi3g02922 474 FunFam Carboxypeptidase 358 457 - -
Vivi3g02922 474 Gene3D - 311 348 - -
Vivi3g02922 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vivi3g02922 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Vivi3g02922 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Vivi3g02922 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Vivi3g02922 474 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 444 IPR001563 GO:0004185|GO:0006508
Vivi3g02922 474 Gene3D - 358 457 - -
Vivi3g02922 474 ProSitePatterns Serine carboxypeptidases, histidine active site. 427 444 IPR033124 GO:0004185
Vivi3g02922 474 Pfam Serine carboxypeptidase 38 456 IPR001563 GO:0004185|GO:0006508
Vivi3g02922 474 Gene3D alpha/beta hydrolase 30 287 IPR029058 -
Vivi3g02922 474 SUPERFAMILY alpha/beta-Hydrolases 25 464 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02922 Vivi-Chr3 48761371 48764224 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02922 319 460 Calmodulin-binding Proteins AT2G22960 28.276 2.52e-13 66.6