Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02907 ATGAAGATAGCACTAGAGAAAAATTTTACAAAGGGACGTAGATCAGAACAAGTACAAGCTTCTTGCCTCTATCTTGCATACCGGGATAAAAATAAGCCATACCTTCTTATTGATTTTTCAAATTCTTTAACGACAAATGTTTATGTGCTCGGCGCAGTTTTTTTGCAGCTTTGTAAAGTGTTAAGGCTTGAAAATCATCCGATTGTTCAAAAGCTTGTTGACCCCAGTCTTTTTATTTACAAATTTACAAATAATTTGTTAAAGCAAAGGAATGTGCCTGTCTCTGAAACTGCACTGAATATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGCGGTGCAGCATTATACATGTCTGCTCTTGCACATGGGTTTACATGCTCTAAGTCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACCAAGCGGCTGGTAGAGTTTGAGAATACAGAGTCCTCCAGTCTGACAATTGATGAGTTGAATGCAATGGCAAAAGAGCATGAAAAAACTCCAATTAAAATACCAAATGGTGAACTGAACAAATGTAATTCAGAGGATCAAGAACTACTGTGTGAACACAAGGGTAGTGGAATGCCCTATTTTGCACTTGGATTATGTGAAGCATGTTACAGGGATTTTGATACACTCTCTGGTGGACTTGATGGTGGTTTAGATCCTCCTGCATTCCAGCGTGCTGAGAGGGATAGAATGATAAAGTCACATTCTGAGGAAAATGCTAATAAATTGGATGATTTGGCAAAGGATTCAAATGGTGCATACGAGAGCCAAATAGAGTTTCATGCTGCCTCTGAGCCTAAAAGTATTGGGGGTGATGAAGGATATATGGCCACTAAGGACGTTGAGCATGATAAGTCACAAATAGAAGGTGACATGAATGCAAAAACTCAAGATGAATCAGAAAGTCTCTCTGATATTGATGACCAGGAGGTTGATGGCTACCTTCACAATGAGGAGGAAAAGCGTTACAAAAAAGAGATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTATCAAGGAAGCAGCTATAGCAGCTGAATTGAAAAAATTAGAGGAAGAATTAAAAAATTGTTCTCCTGAATCTCGTGCAGCAAGAGAGCTTGCTGCTGAAGCTGCTGAAGCTGTGGCAAAATCTAGAAAGGAAATGAGGCAGAAACGAGCTCTAGAGGCAAAAAGTTTGGGTCCTGCTAAATCTGCTGTAGAGGCAACGAGCCGAATGTTGAAAACAAAGAAGCTCAGCTCCAAAGTCAATTATGATTCTTTGAAGAAATTATTTGATGAACCTGCATCTCCACAGAATCAAAAGAAAGTACGATTTGAGTTACCCTCAAAGGATGATGATGATAATTTGGAATTGAAGTCAGACCACAAAACAAAGAATGATGATTATGAATTGGCCGACGAATACGTGGAGGATGATATGAATGGAGAATACAATGATACTTTGTATCCAGTAAATGATTATGATGAGACATACTATGGGGAAGATGGATATGATGGTTTTATGTAA 1569 0.3888 MKIALEKNFTKGRRSEQVQASCLYLAYRDKNKPYLLIDFSNSLTTNVYVLGAVFLQLCKVLRLENHPIVQKLVDPSLFIYKFTNNLLKQRNVPVSETALNIIASMKRDWMQTGRKPSGLCGAALYMSALAHGFTCSKSDILRIVHVCEATLTKRLVEFENTESSSLTIDELNAMAKEHEKTPIKIPNGELNKCNSEDQELLCEHKGSGMPYFALGLCEACYRDFDTLSGGLDGGLDPPAFQRAERDRMIKSHSEENANKLDDLAKDSNGAYESQIEFHAASEPKSIGGDEGYMATKDVEHDKSQIEGDMNAKTQDESESLSDIDDQEVDGYLHNEEEKRYKKEIWEFNNREYLEEQAIKEAAIAAELKKLEEELKNCSPESRAARELAAEAAEAVAKSRKEMRQKRALEAKSLGPAKSAVEATSRMLKTKKLSSKVNYDSLKKLFDEPASPQNQKKVRFELPSKDDDDNLELKSDHKTKNDDYELADEYVEDDMNGEYNDTLYPVNDYDETYYGEDGYDGFM 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02907 522 Gene3D - 1 66 - -
Vivi3g02907 522 FunFam Transcription factor IIIB subunit 74 163 - -
Vivi3g02907 522 CDD CYCLIN_TFIIIB90_rpt2 71 161 - -
Vivi3g02907 522 Pfam Transcription factor TFIIB repeat 2 58 IPR013150 GO:0017025
Vivi3g02907 522 Pfam Transcription factor TFIIB repeat 70 160 IPR013150 GO:0017025
Vivi3g02907 522 Gene3D Single helix bin 298 362 - -
Vivi3g02907 522 MobiDBLite consensus disorder prediction 444 484 - -
Vivi3g02907 522 Coils Coil 353 373 - -
Vivi3g02907 522 SUPERFAMILY Cyclin-like 72 163 IPR036915 -
Vivi3g02907 522 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 436 IPR000812 GO:0006352|GO:0070897
Vivi3g02907 522 MobiDBLite consensus disorder prediction 458 484 - -
Vivi3g02907 522 MobiDBLite consensus disorder prediction 402 423 - -
Vivi3g02907 522 Pfam Brf1-like TBP-binding domain 321 446 IPR011665 -
Vivi3g02907 522 SUPERFAMILY Cyclin-like 2 65 IPR036915 -
Vivi3g02907 522 Gene3D - 74 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02907 Vivi-Chr3 48458550 48472636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02907 4 430 Inorganic Solute Cotransporters AT2G01280 44.470 1.06e-92 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02907 K15196 - gmx:100789154 534.643