Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02906 ATGGTGTACTGTGATCACTGTGTCAGAAACGTTCATGGACAGCGAATCGACGATAGTGTCTTATGTTGTGAGGACTGTGGGAAGGTGTTGGAAGATTACTATTTTTCTCAGGAGGCAACTTTTGTGAAAACTGCTGGTGGAAAGAGCCAATTATCAGGCAATTTTGTAAATGGGGTTCGTGTTGGAATTTCCGAATCACGTGCAAGGACTTTAGATAAAGCTAGAGATTTTATGAAAAATCTAAGTGTCGGCCTTGGAGTGGAAGATAATAGTATAGTTGAGGAAGCTTTGGCCTTTTATACAATAGCACTAGAGAAAAATTTTACAAAGGGACGTAGATCAGAACAAGTACAAGCTTCTTGCCTCTATCTTGCATACCGGGATAAAAATAAGCCATACCTTCTTATTGATTTTTCAAATTCTTTAACGACAAATGTTTATGTGCTCGGCGCAGTTTTTTTGCAGCTTTGTAAAGTGTTAAGGCTTGAAAATCATCCGATTGTTCAAAAGCTTGTTGACCCCAGTCTTTTTATTTACAAATTTACAAATAATTTGTTAAAGCAAAGGAATGTGCCTGTCTCTGAAACTGCACTGAATATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGCGGTGCAGCATTATACATGTCTGCTCTTGCACATGGGTTTACATGCTCTAAGTCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACCAAGCGGCTGGTAGAGTTTGAGAATACAGAGTCCTCCAGTCTGACAATTGATGAGTTGAATGCAATGGCAAAAGAGCATGAAAAAACTCCAATTAAAATACCAAATGGTGAACTGAACAAATGTAATTCAGAGGATCAAGAACTACTGTGTGAACACAAGGGTAGTGGAATGCCCTATTTTGCACTTGGATTATGTGAAGCATGTTACAGGGATTTTGATACACTCTCTGGTGGACTTGATGGTGGTTTAGATCCTCCTGCATTCCAGCGTGCTGAGAGGGATAGAATGATAAAGTCACATTCTGAGGAAAATGCTAATAAATTGGATGATGATTCAAATGGTGCATACGAGAGCCAAATAGAGTTTCATGCTGCCTCTGAGCCTAAAAGTATTGGGGGTGATGAAGGATATATGGCCACTAAGGACGTTGAGCATGATAAGTCACAAATAGAAGGTGACATGAATGCAAAAACTCAAGATGAATCAGAAAGTCTCTCTGATATTGATGACCAGGAGGTTGATGGCTACCTTCACAATGAGGAGGAAAAGCGTTACAAAAAAGAGATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTATCAAGGAAGCAGCTATAGCAGCTGAATTGAAAAAATTAGAGGAAGAATTAAAAAATTGTTCTCCTGAATCTCGTGCAGCAAGAGAGCTTGCTGCTGAAGCTGCTGAAGCTGTGGCAAAATCTAGAAAGGAAATGAGGCAGAAACGAGCTCTAGAGGCAAAAAGTTTGGGTCCTGCTAAATCTGCTGTAGAGGCAACGAGCCGAATGTTGAAAACAAAGAAGCTCAGCTCCAAAGTCAATTATGATTCTTTGAAGAAATTATTTGATGAACCTGCATCTCCACAGAATCAAAAGAAAGTACGATTTGAGTTACCCTCAAAGGATGATGATGATAATTTGGAATTGAAGTCAGACCACAAAACAAAGAATGATGATTATGAATTGGCCGACGAATACGTGGAGGATGATATGAATGGAGAATACAATGATACTTTGTATCCAGTAAATGATTATGATGAGACATACTATGGGGAAGATGGATATGATGGTTTTATGTAA 1857 0.3915 MVYCDHCVRNVHGQRIDDSVLCCEDCGKVLEDYYFSQEATFVKTAGGKSQLSGNFVNGVRVGISESRARTLDKARDFMKNLSVGLGVEDNSIVEEALAFYTIALEKNFTKGRRSEQVQASCLYLAYRDKNKPYLLIDFSNSLTTNVYVLGAVFLQLCKVLRLENHPIVQKLVDPSLFIYKFTNNLLKQRNVPVSETALNIIASMKRDWMQTGRKPSGLCGAALYMSALAHGFTCSKSDILRIVHVCEATLTKRLVEFENTESSSLTIDELNAMAKEHEKTPIKIPNGELNKCNSEDQELLCEHKGSGMPYFALGLCEACYRDFDTLSGGLDGGLDPPAFQRAERDRMIKSHSEENANKLDDDSNGAYESQIEFHAASEPKSIGGDEGYMATKDVEHDKSQIEGDMNAKTQDESESLSDIDDQEVDGYLHNEEEKRYKKEIWEFNNREYLEEQAIKEAAIAAELKKLEEELKNCSPESRAARELAAEAAEAVAKSRKEMRQKRALEAKSLGPAKSAVEATSRMLKTKKLSSKVNYDSLKKLFDEPASPQNQKKVRFELPSKDDDDNLELKSDHKTKNDDYELADEYVEDDMNGEYNDTLYPVNDYDETYYGEDGYDGFM 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02906 618 Pfam Brf1-like TBP-binding domain 417 542 IPR011665 -
Vivi3g02906 618 Gene3D - 173 264 - -
Vivi3g02906 618 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Vivi3g02906 618 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Vivi3g02906 618 FunFam Transcription factor IIIB subunit 173 262 - -
Vivi3g02906 618 SUPERFAMILY Cyclin-like 171 262 IPR036915 -
Vivi3g02906 618 Coils Coil 449 469 - -
Vivi3g02906 618 SMART cyclin_7 176 259 IPR013763 -
Vivi3g02906 618 SMART cyclin_7 76 158 IPR013763 -
Vivi3g02906 618 Gene3D - 62 165 - -
Vivi3g02906 618 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 532 IPR000812 GO:0006352|GO:0070897
Vivi3g02906 618 MobiDBLite consensus disorder prediction 554 580 - -
Vivi3g02906 618 SUPERFAMILY Cyclin-like 73 164 IPR036915 -
Vivi3g02906 618 Gene3D Single helix bin 394 458 - -
Vivi3g02906 618 MobiDBLite consensus disorder prediction 543 580 - -
Vivi3g02906 618 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Vivi3g02906 618 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Vivi3g02906 618 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Vivi3g02906 618 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Vivi3g02906 618 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02906 Vivi-Chr3 48458550 48474937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02906 1 526 Inorganic Solute Cotransporters AT2G01280 43.925 1.56e-114 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02906 K15196 - gmx:100789154 651.744