Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02901 ATGGTTCTGTGCTGCAAAGACTGTGGTGAAGGTGTAAGTGAACCTGTGAAATCCAAGAAAAAAGAAGCATCTATGAAAGCAAAAACTTCTACGAGTCGAGAAAAAGACGACAAAATCGTCTTTTTTGCCGATTGTAATCATCTTGCATTTGATCTTGAGGACCTTCTGAGAGCTTCTGCTGAGGTATTTGGAAAGGGTGTTTTTGGTACAACATATAGAGCTGCTTTAGATGATGCAACCACTGTGGTGGTCAAGAGATTGAAAGATGTTGCTGTAGGGAAAAAGGAGTTTGAACAACAGATGGAAGTTGTAGGTAAAATTAAGCATGAAAATGTGGATCCAATAAGAGCTTATTATTATTCAAAGAATGAGAAACTGGTTCTTTCTGATTATTATCAACAAGGCAGTGTTTCTTCCATGTTGCATGGCAAAAGAGGTGAAGGAAGCAGTTCTTCTCTAGACTGGGCTAGCCGATTAAGGATCGCGATCGGTACAGCAAGAGGCATTGCTCACATCCATGCTCAGCCAGGAAATCTAGTTCATGGAAACATAAAAGCCTCAAACATTTTCCTCAACTCACAAGGATATGGTTGTGTAGCTGACATAGGTTTAGCAACATTGATGAGATCAGTACCTTTAGCAGACAGTAGAGTAACAGGATACCGCGCGCCAGAAGTAACCGACACGCGTAAAGCAACGCAGTCGTCTGATGTATACAGTTTTGGTGTCGTGTTACTTGAGCTTCTAACTGGGAAGTCACCTTTATATGCTTCAGATGGTGAACAAGTTGTTGACTTGGTTAGATGGGTGAAATCTGTTGTGAAAGAGGAATGGACTGCAGAGGTTTTCGATGTGGAGCTTTGGAAGTATTCAAATGTAGAAGAAGAAATGGTGGGGATGCTGCATATTGGGATAACTTGTGCAGTAAAAAAGCCACATCAGAGACCACAGATGTCTGAAGTTGTGAAAATGATGGAAGGGATTTGTCCTGAGAAAAGATCAGAAGTTTCTACTCCAACTGTTTGTGCAACTTAA 1035 0.4106 MVLCCKDCGEGVSEPVKSKKKEASMKAKTSTSREKDDKIVFFADCNHLAFDLEDLLRASAEVFGKGVFGTTYRAALDDATTVVVKRLKDVAVGKKEFEQQMEVVGKIKHENVDPIRAYYYSKNEKLVLSDYYQQGSVSSMLHGKRGEGSSSSLDWASRLRIAIGTARGIAHIHAQPGNLVHGNIKASNIFLNSQGYGCVADIGLATLMRSVPLADSRVTGYRAPEVTDTRKATQSSDVYSFGVVLLELLTGKSPLYASDGEQVVDLVRWVKSVVKEEWTAEVFDVELWKYSNVEEEMVGMLHIGITCAVKKPHQRPQMSEVVKMMEGICPEKRSEVSTPTVCAT 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02901 344 SUPERFAMILY Protein kinase-like (PK-like) 61 325 IPR011009 -
Vivi3g02901 344 FunFam pollen receptor-like kinase 1 24 131 - -
Vivi3g02901 344 PANTHER OS05G0588300 PROTEIN 6 333 - -
Vivi3g02901 344 Gene3D Phosphorylase Kinase; domain 1 20 131 - -
Vivi3g02901 344 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 132 338 - -
Vivi3g02901 344 ProSiteProfiles Protein kinase domain profile. 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02901 344 Pfam Protein tyrosine and serine/threonine kinase 61 324 IPR001245 GO:0004672|GO:0006468
Vivi3g02901 344 Gene3D Transferase(Phosphotransferase) domain 1 132 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02901 Vivi-Chr3 48424406 48425967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02901 9 334 Receptor kinase-like Gene Family AT4G23740 59.574 1.61e-137 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi3g02901 PK_Tyr_Ser-Thr 9.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02901 - - mtr:25489776 481.87