Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02899 ATGGAACAACAACATCATCATCAACAACAACAACAACAACCTAGTATCCTATGCAAATACACAGAACATCACACAGTTACAAAAAAACTCATCACAACTAAGAAAACCGCAAACAGCAACAAAACAAACTCAACTATATACCCAAGAGTTGTACAAATATCCGTCACCGACCCGGATGCGACTGACTCATCCAGCGACGAAGAAGAAAGTTTCTCTAGAAAAAGAACAAAGCGTTATATCCACCGTGTTGAAATCGAAACCGCCGCTAAAGCCGTGGTTAATCGAAAAAGACCTGCCGGAGAAGCATCGACTGTTAAAAGGCCGGCGAAAGTTCCTGTTGTCATCAGTGGTAGAAAGTTCCGTGGTGTACGGCAGAGGCCATGGGGGAAATGGGCCGCTGAGATTCGCGATCCTGCTCGGAGAGTACGGCTTTGGTTAGGTACTTTCGAAACTGCAGAAGAAGCTGCTATGGTGTACGACAATGCCGCCATTAAGCTTCGTGGACCCGATGCTTTGACAAACTTTATCACACCGCCGCAGAGAGAAAACCCGGTAGAAGAAAAACCCTCCGTCGTGAAACAAGAAATGAAGGTAATCATCGACGCTGACACCGACAACAACGCAGAAGCTTCTGGTTCTGGTTCTGGTAACTCCGGTTACGACTCCGGCGAAGATCGTTGTGTTCCTCTCTCTTCTCCTACTTCAGTTTTAAATTTCCGAACTAACTCCGGCGAGTCGGAGGAGCAAAACGAAGCGTGTGGAGTTTTCAGAGAATGTCAAGGTGAGACAAACTTGTTAGACGAAACGGCGTCGTTTTTTGAACATGAGTTTCCCATGCCTTGTTGGGACGACGTGTTCAACTTCGAAACACCAGAGTTTCCTATGATGTTTGAAGAAGAACAAAACACAATGTTTGGGGAAACTACGACGCCGTTTTTGTGTGACCAAGAATTAAACGACAGCATTGTTCTTGCTGACTCACTCATAGATTTCGACAAAGCTTGTTTCTCTTCTCCTTCTTCATCGTTATGCCAAGTGGATGATTTCTTCCAAGATATTTTGTTAGGCTCGGATCCTCTAGTTGTCCTTTGA 1092 0.4515 MEQQHHHQQQQQQPSILCKYTEHHTVTKKLITTKKTANSNKTNSTIYPRVVQISVTDPDATDSSSDEEESFSRKRTKRYIHRVEIETAAKAVVNRKRPAGEASTVKRPAKVPVVISGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFITPPQRENPVEEKPSVVKQEMKVIIDADTDNNAEASGSGSGNSGYDSGEDRCVPLSSPTSVLNFRTNSGESEEQNEACGVFRECQGETNLLDETASFFEHEFPMPCWDDVFNFETPEFPMMFEEEQNTMFGETTTPFLCDQELNDSIVLADSLIDFDKACFSSPSSSLCQVDDFFQDILLGSDPLVVL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02899 363 CDD AP2 119 175 IPR001471 GO:0003700|GO:0006355
Vivi3g02899 363 MobiDBLite consensus disorder prediction 203 227 - -
Vivi3g02899 363 FunFam Ethylene-responsive transcription factor 2 118 177 - -
Vivi3g02899 363 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Vivi3g02899 363 MobiDBLite consensus disorder prediction 206 220 - -
Vivi3g02899 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 48 267 - -
Vivi3g02899 363 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Vivi3g02899 363 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Vivi3g02899 363 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vivi3g02899 363 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Vivi3g02899 363 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Vivi3g02899 363 SUPERFAMILY DNA-binding domain 119 175 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02899 Vivi-Chr3 48351930 48353866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02899 18 245 AP2-EREBP Transcription Factor Family AT4G27950 48.333 2.67e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g02899 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02899 - - gmx:100807598 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02899 3 48351930 48353866 Vivi3g02899 3 48351930 48353866 ECH