Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02896 ATGGATGAGAGTTTATATGATATATTTGAAGACAGAACAGACGATGATCTTTTTGCCATTTTGGAGAGTCTAGAAAATTTCACTGATTTTCCTCTCATTAACAACAACAACCAACCTGAAACTGTTATTACTCCAAAAGAGAATGATTCAACTTCCACTTCTAGATTACTGTCTCAGAAATCAGTTTCTTCACAGCAAGATTCTGAAACTGAAGTTGAAACTGAACACAAAAACAAGAGACAGAAACTTACACCATCTTTGCTACAAGAACAGATCATTAACAGTGATGGACAACAAAGGGTTTCTCACATTACCGTCGAACGGAACCGAAGAAAGCAAATGAATGAACATTTGTCTGTTTTAAGATCACTCATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGCGTAGTGGATTACATCAACGAGTTGCAACAACTCCTCCAAGCACTCGAAGCAAAAAAACAACGTAAGGTATACACCGAAGTACTAAGTCCGAGAATACTTTCATCGAGTCCACGACCTTTGCCGTTAAGTCCCCGAAAACCACCGTTGAGTCCAAGACTAAACCTACCTATTAGTCCAAGAACACCACAACCAAGTAGCCCTTACAAGCCAAGAATGCAACAAAGCTACAACAATATCTTACTGTCACCTCTTGATCCATCTCCTACTACTTCTTCATCTGCTTCATCTGTGAATGATAATATCAATGAACTTGTGGCTAATTCTAAGTCTCATGTTGCTGACGTGGAGGTGAAGTTTTCAGGTCCTCATGTTTTGTTGAAAACTGTTTCTCAAAGAATTCCAGGACAAGCTTTGAAGATTATATCTGCGCTGGAAAATCTTGCACTTGAAATACTTCATGTTAACATTAATAGTACTTCTGATGATACTATGTTGAACTCATTCACTATTAAGATTGGAATTGAATGCCAGCTGAGTGCAGAAGAATTGGCTCAACAAATCCAGCAAACATTCTGCTAA 1002 0.3822 MDESLYDIFEDRTDDDLFAILESLENFTDFPLINNNNQPETVITPKENDSTSTSRLLSQKSVSSQQDSETEVETEHKNKRQKLTPSLLQEQIINSDGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQALEAKKQRKVYTEVLSPRILSSSPRPLPLSPRKPPLSPRLNLPISPRTPQPSSPYKPRMQQSYNNILLSPLDPSPTTSSSASSVNDNINELVANSKSHVADVEVKFSGPHVLLKTVSQRIPGQALKIISALENLALEILHVNINSTSDDTMLNSFTIKIGIECQLSAEELAQQIQQTFC 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02896 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
Vivi3g02896 333 MobiDBLite consensus disorder prediction 69 83 - -
Vivi3g02896 333 SMART finulus 104 155 IPR011598 GO:0046983
Vivi3g02896 333 MobiDBLite consensus disorder prediction 175 212 - -
Vivi3g02896 333 Coils Coil 142 166 - -
Vivi3g02896 333 MobiDBLite consensus disorder prediction 181 207 - -
Vivi3g02896 333 Gene3D - 89 163 IPR036638 GO:0046983
Vivi3g02896 333 PANTHER TRANSCRIPTION FACTOR FAMA 9 332 IPR044283 GO:0003700|GO:0010052
Vivi3g02896 333 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Vivi3g02896 333 MobiDBLite consensus disorder prediction 32 83 - -
Vivi3g02896 333 FunFam Transcription factor SPEECHLESS 90 164 - -
Vivi3g02896 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 168 IPR036638 GO:0046983
Vivi3g02896 333 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02896 Vivi-Chr3 48225932 48229248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02896 15 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.537 1.82e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g02896 HLH 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02896 K20558 - gmx:100777437 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02896 3 48225932 48229248 Vivi3g02896 3 48225932 48229248 ECH