Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02883 ATGAAACATATGCTTTTTCTACTTGTCACTTTCAAGATTATAAAAAAGAAGTTGACAAAGCTACGAGAGAGAATGGGGTTTCAAACAACACACAACACTATGAAATCAAAAGATGACTCAAACAACACTCATGGACAACAACACTCTTTAATTCCAAGGGCACTCAACTTGACTCATCATTCTTTAACCACAAATAATACCAAATTCATTCACTCTGGCTATGATTCATGGCTGGTAACACACCCTTCAGCATTGAGCTCATTCGATAGATTGATGAAAGGTGTCAATGGAAAAAGAATCGTCGTATTTTTAGATTATGACGGTACCTTATCACCCATTGTAAATAACCCTGATCGCGCTTTCATGTCTGATGAGATGCGTGCAGCAGTATCTGAAGTTGCTACTTATTTTCCAACAGCAATAATTACTGGAAGAGGCAGGGAAAAAGTAAAAGATTTTGTGAAGTTAAATAATTTATATTATGCTGGGAGTCATGGTATGGACATAATGGCACCATCAGTGCCAATTAACCAATGTGACAACACTACTCTTCACACAAATGGCAACGGAGTTCCCTTTCAACCTGCCAAGAAATTTTTGCCTGCAATTCAAGAGATGTTAAAAAGATTAGAGGATGTAATAAAGGGCATAGAAGGTGCAAGTATAGAAGATAACCAATTCTGTGTCTCGGTACATTTTCGGCAGGTTCATGAAAAGGATTATAATGTTTTGGAAGAGAAAGTGAAGTCTGTGCTTGCAAAATATCCATTGTTCTGCATGAATGAGGGTAAAAAGGTTATGGAAATAAGACCATCAATAAAATGGAACAAAGGAAATGCTATAGAATATTTTTTAGACACATTGGGATTAAGCAATTCCAACAATTTTCTTCCTTTGTATATTGGAGATGATAGAACTGATGAAGATGCTTTTAAGGTTATACGAAGTAGAGGGCAAGGTTATCCGATTATAGTGTCTTCGACTCCGAGAGAAACATGTGCTTTGTACTCTTTGCGTGATCCGTCAGAAGTACTAATCTTCTTGTCAAGGCTAGCAAAATGGAGGAAGAGATTTTAA 1077 0.3668 MKHMLFLLVTFKIIKKKLTKLRERMGFQTTHNTMKSKDDSNNTHGQQHSLIPRALNLTHHSLTTNNTKFIHSGYDSWLVTHPSALSSFDRLMKGVNGKRIVVFLDYDGTLSPIVNNPDRAFMSDEMRAAVSEVATYFPTAIITGRGREKVKDFVKLNNLYYAGSHGMDIMAPSVPINQCDNTTLHTNGNGVPFQPAKKFLPAIQEMLKRLEDVIKGIEGASIEDNQFCVSVHFRQVHEKDYNVLEEKVKSVLAKYPLFCMNEGKKVMEIRPSIKWNKGNAIEYFLDTLGLSNSNNFLPLYIGDDRTDEDAFKVIRSRGQGYPIIVSSTPRETCALYSLRDPSEVLIFLSRLAKWRKRF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02883 358 FunFam Trehalose 6-phosphate phosphatase 201 357 - -
Vivi3g02883 358 NCBIfam HAD-IIB family hydrolase 102 315 IPR006379 -
Vivi3g02883 358 Gene3D - 191 358 IPR023214 -
Vivi3g02883 358 Gene3D - 100 178 IPR023214 -
Vivi3g02883 358 FunFam Trehalose 6-phosphate phosphatase 196 272 - -
Vivi3g02883 358 CDD HAD_TPP 101 344 - -
Vivi3g02883 358 NCBIfam trehalose-phosphatase 97 353 IPR003337 GO:0003824|GO:0005992
Vivi3g02883 358 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 44 356 IPR044651 GO:0004805|GO:0005992
Vivi3g02883 358 SUPERFAMILY HAD-like 101 355 IPR036412 -
Vivi3g02883 358 Pfam Trehalose-phosphatase 103 342 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02883 Vivi-Chr3 47967346 47981341 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02883 96 352 Trehalose Biosynthesis Gene Families AT1G23870 26.182 4.82e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02883 K01087 - gmx:100809194 493.812