Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02878 ATGGTATGCGGCAGGTGTGTGAGTTCTATTTTTGTTCGAGCTGGAATTTTGAACAGGAGATTGCGATTCAGCTTTGTTGGGAAGGGTTTGTTGCCTAGAGTTGGTCAGGAAGTTGCTGTTGATTTTCCGAATCGTGTGTTTAAGAGGTATCTAGGGATGATGGTTGATACAGGTTCTATGTCGACTAGGGCTGGTCCTTCTATGGATACGGCGTCGCAGAAAGATGATGATTCCGCTCGGTCTGGTTTTGTTACTGGTGGATGGAAGAGTGAAGATGAAAGACTTGTCTGTGGGTATTCAAGCTTTAGAGGGAAGAGAGTGACCATGGAAGATTTCTATGATGTTAAGACATCAATCATTGACGGTCGTTCAGTGAGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCTGAGTATTTGAAGGATCATCTATTTGAAAATCTCACGAAGCATCCAAAGTTTTTGACGGATACCAAATTGGCTATAAGTGAAACATATCAGAAAACCGATGCTGAGTTTCTGGACTCTGTAAAAGATAATTTCCGGGATGACGGTTCTACTGCTTCAACAGCTGTTTTGGTCGATAACCATCTTTATGTTGCTAATGTTGGAGATTCTAGAACTGTAATATCAAAAGCTGGAAAAGCAATTGCTCTCTCTGAGGATCATAAGCCTAATAGAAGTGACGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGAGTTGGAGGGGTGCTGGCAATGTCTCGTGCATTTGGCAACCGTATGCTGAAGCCGTTTGTTGTAGCAGAACCTGAGATCCAGGAGCAGAAAATAGATGAAGAAACCGAGGTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATGACGCTGTTTCTATTGCCCGGGCGGAAGAGGCAGCCGAGGCAGCTGCTCGGAAGTTAACAGAAGCCGCATTTAATCGCGGTAGTGCAGATAACATTACTTGCATTGTGGTACGATTCAATCATGAAAAAAGACACCCAGCTAATCCTGATAAAGCTGATCCAGCTAATCCTGAAAAAAGCAGTCAGCATGCATGA 1104 0.4411 MVCGRCVSSIFVRAGILNRRLRFSFVGKGLLPRVGQEVAVDFPNRVFKRYLGMMVDTGSMSTRAGPSMDTASQKDDDSARSGFVTGGWKSEDERLVCGYSSFRGKRVTMEDFYDVKTSIIDGRSVSLFGIFDGHGGSRAAEYLKDHLFENLTKHPKFLTDTKLAISETYQKTDAEFLDSVKDNFRDDGSTASTAVLVDNHLYVANVGDSRTVISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQEQKIDEETEVLVLASDGLWDVVQNDDAVSIARAEEAAEAAARKLTEAAFNRGSADNITCIVVRFNHEKRHPANPDKADPANPEKSSQHA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02878 367 CDD PP2Cc 96 342 IPR001932 -
Vivi3g02878 367 ProSiteProfiles PPM-type phosphatase domain profile. 96 342 IPR001932 -
Vivi3g02878 367 SMART PP2C_SIG_2 92 342 IPR001932 -
Vivi3g02878 367 Gene3D - 87 351 IPR036457 -
Vivi3g02878 367 Coils Coil 308 328 - -
Vivi3g02878 367 SUPERFAMILY PP2C-like 93 344 IPR036457 -
Vivi3g02878 367 MobiDBLite consensus disorder prediction 61 85 - -
Vivi3g02878 367 FunFam Probable protein phosphatase 2C 76 88 348 - -
Vivi3g02878 367 Pfam Protein phosphatase 2C 98 335 IPR001932 -
Vivi3g02878 367 MobiDBLite consensus disorder prediction 346 367 - -
Vivi3g02878 367 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Vivi3g02878 367 PANTHER PROTEIN PHOSPHATASE 77 342 IPR015655 GO:0004722|GO:0006470
Vivi3g02878 367 SMART PP2C_4 86 340 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02878 Vivi-Chr3 47865750 47872331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02878 1 346 PP2C-type Phosphatase Gene Family AT5G53140 63.687 1.10e-160 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02878 K17506 - gmx:100805795 519.62