Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02869 ATGAACATTCCCAATCCCATACTCATCCTAATTTGTTTCCATTTCCTCTTCAACCCCCATCAAACACAGACACTAGCACAATCAACCACAGAAACATGCTTAGACACTGTTTGCCACACAAATCAACCACCAATCCGATTCCCATTCTACATAGAAACAAAACAACCAAACAACACATGTGGCTACCCAGGTTTCAAACTACTATGCAATAACCAAACACTCCTCAATCTACCTTACATGGAAGAATTCAACATCCAAAAAATAAACTATGCCACACAAGAACTCTTCGTGAATGATCCCAATAACTGTCTCCCAAAACGACTTCTCTCGCTCAACCTCTCTTCTTCTCCATTCCATGCCGTTTACTATCAACAATTCACCTTTTTCAACTGTTCCTTTAACTTGAAACATCTCACATCTCGTTACAAACCAATACCTTGTCTAAGTGATTCTTCCAAGTACGCAGTTTTCGCAACACCTTCTCTTACTGTGTTTTTGCACTTGTCATCTGTTTGTAAATTGGTTGACACTGTGAATGTGCCGGTTCAATCGCCGTTTTATGATCAAGTGCTGTCGTCTGAACTCAACGACGATCTTCGGTTGTCGTGGAATTCGCCGTCGTGTGGACGGTGTGAGTCTCACGGTGGAAGATGTGGTTTCCAAGATAACTCCACTCTTGAAACTGCTTGTTACAACGTCCCTCCAAGACGAGGGATTTCCCGTGGTGCAAGTTACACCATAGCTATATGTGTAGGAGTACCAACACTGTTATGCTTCATTTCTTTATTGAGTTGGATATGCAGCAAGTTCAGATTTGGGATCCATGGTTGGACTTGGGCTCATGAGACAGTGGCAGATTTTGAGCCTCTTCTTGATCCACAACAATATACCAACATTTTGGGTCTTGATAAACCTACTATTGAATCTTACCCTAAAATAGTTATAGGTGATGATGGCATTCACTTACCAAGGCCTAATGATAAGACATGCTCAATATGCTTGTGTGAGTATATGCCTAAAGAGACAGTGAAAACTATGCCTGAATGTGAACATTGCTTTCATGCGCAATGCATCGATGAATGGCTTCTACTGAATGCGTCGTGTCCGATCTGTCGAACTTCTCCTCCTTGGTTACCATCACAGAATTTAGCTCAATCATGA 1161 0.4169 MNIPNPILILICFHFLFNPHQTQTLAQSTTETCLDTVCHTNQPPIRFPFYIETKQPNNTCGYPGFKLLCNNQTLLNLPYMEEFNIQKINYATQELFVNDPNNCLPKRLLSLNLSSSPFHAVYYQQFTFFNCSFNLKHLTSRYKPIPCLSDSSKYAVFATPSLTVFLHLSSVCKLVDTVNVPVQSPFYDQVLSSELNDDLRLSWNSPSCGRCESHGGRCGFQDNSTLETACYNVPPRRGISRGASYTIAICVGVPTLLCFISLLSWICSKFRFGIHGWTWAHETVADFEPLLDPQQYTNILGLDKPTIESYPKIVIGDDGIHLPRPNDKTCSICLCEYMPKETVKTMPECEHCFHAQCIDEWLLLNASCPICRTSPPWLPSQNLAQS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02869 386 Pfam Wall-associated receptor kinase galacturonan-binding 33 99 IPR025287 GO:0030247
Vivi3g02869 386 CDD RING-H2_EL5-like 330 372 - -
Vivi3g02869 386 ProSiteProfiles Zinc finger RING-type profile. 330 372 IPR001841 -
Vivi3g02869 386 SMART ring_2 330 371 IPR001841 -
Vivi3g02869 386 SUPERFAMILY RING/U-box 324 376 - -
Vivi3g02869 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 376 IPR013083 -
Vivi3g02869 386 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 375 IPR046948 -
Vivi3g02869 386 Pfam Wall-associated receptor kinase C-terminal 171 231 IPR032872 -
Vivi3g02869 386 Pfam Ring finger domain 329 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02869 Vivi-Chr3 47766518 47769027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02869 31 375 C3H Transcription Factor Family AT2G46495 36.182 1.67e-64 207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02869 3 47766518 47769027 Vivi3g02869 3 47766518 47769027 ECH