Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02865 ATGATTATCAAGCGGGAGTTGAAATCTCAAATGCCGCGTTTGAAACGGTGCAGACTCGGTGACTCGGTTGGAGAAGATGAAGACTGCTCTTATGCTTCTAAGAAGAGGAAAACGAGCGGTTATTATTATCCTTTGAATCTTTTAGGTGATGTTGCTGCTGGTTTAATTCCGGCGAGTTTTCACGGTTTGTTGAGTGCTGGTGTATCCGAGAGGTCGTGGTGCACTCAAGTTCCGTGCTCCCCCGGTGAGGTTGAGTCGAAGTCGAAGGAGGAGATGGTTCCAGTGAAGAAAAGTCAGGTTCAGCGACCGCCGCTGGTTCGAACTTCGAGAGGGCGAGTTCAGGTTCTTCCTTCTCGTTTTAATGACTCTGTTATTGATAATTGGAAGAAAGATGGGAGAACCGCCTCTCGTGATTGTGAAGTTGAAGGTGAATTTGAATGCAAGAAGGACATGGTAGTAACCAAACCTTGCAATAACAATGTTAGGAAAGGGCGTAACAGTGGGAAAATTTGTTATAAGCAGCGCAAGTATTCGGCATTGTGTGAGGACGAAGATTTTACCGTGAGCGGGAGGCGTAAGAGTTTTGGTAGAAGGAAGGATTCAGCTTTGGATGATGATGAAGATGATTTGGGGATGGGTGGTGATGAAATAGTTGGTTTGAAGGAGAGTAATGAAGAGAAGAAAGATGGGTTATATGGGCCAGAAGATTTTTATGCCTGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTCTTTGGCCAGCTGTTGTTATTGATCCTACGAAACAAGCACCTGAATTGGTCCTAAGGTCTTTTATAGCTGATGCTGCATGTGTCATGTTTCTTGGCAATGCTGGAAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATTTATGGATTATGTTGACAGGTTTCAAGAGCAGCCTGAGTTGAGTAACTATAGTCCCTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCTGACCAAGGCTTTACAGAGAAGTTGATAAATGATATAAATGCAGCAGCTTGTGCTACTGTTTATGATGATACTGTTCTGAAATCCTCCTTCCGGGAGATCTGTGGTTCAAACCAGTATGGAAGAGCAGGAAAGCATTTTCTGAACCAGGATTTATGTGAAGCGTGTGGATTGACACTTTCTTACAAGATGTCAAAGAAAACTAATGGTTTGACTCCTAATGGTCAACTCCTATGTAAGACATGTGCAAGGTTAACGAAATCAAAACATTACTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCTGAATGTGACCAGATTTCTAGAAACCATTTCAAGGATCTTGAAAGCACCGATTATTACTGCCCCACATGTAGAGGCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAATCGAAGACAAAAGTCAGATCAAACCGAAACAATGGGCAGCTTGTGCCTTCAAATAAGGTCACTGTTCTCTGCAATGGTGTGCAAGGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCTCTTAGCGAATGGGAACGGCACACAGGTTCCAAATTAAGAAATTGGAAAACAAGTATTACTGTGAAAGACTCTAGGCTACCTTTGGAACAATGGATGCTGCAGGTTGCCGAAGTTCATGCTAATTCTCTAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTCTTGAAAGAGAGGTATGAACCTGTTTATGCTAAGTGGACTACAGAGCGTTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAATAAAATCATCATTTGCAACAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGTATTAAATGTTAAAGACTTTACATCTTGGGTCTGTAAGACCTGCGAGACACCTAAAATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATATTGACACATTGTGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGAAAATGGAACCTGCTTTGGGCATTCTTAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCACGGTTCCTGTACACAATGCTGCAAATGCTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAGTTGCATTGTTCGAAGAAAAACGGGAAGACAATAACAAAAATGGTTTCATATTGTGCTTACCACAGAGCTCCAAATCCTGACAATGTTTTGATTTTGCAAACCCCTCTCGGGGTCATTTCAACCAAAAGCCTTCTTCAAAAGAAAAAAACTGGATCAAGGTTAATCTCATCTAACAGAATAAAGCAAGAAGAGACTCCTATTGATATCACTGAGCATGACCCATTCTCTGCTGCTCGGTGTCGTATCTTTAAAAGAACAAATCATACCAGAAAGAGAGCTTCTGATGAAGCAGTTTTTCATCAGGCGAGGGGTCACTGCCACCACCCTTCGGATGCGATACAGAGTTTAAATGCATACAGAACAGTGAAGGAGCCTCCAGCTTTCTCTTCTTTCAGAGAACGACTTTACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGGGAACAAGTAAGACGCAGCATTGCTGATTTGAGGGAGGCACGCTATAGAGCAGAAGGGAAAGACTGCTACCTGTTTAAGATAAGCGAAGAAGTGGTGGTAGATGCCACTAATAAAGGGAATATAGCTCGACTAATCAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGAGATGATGAGAGCCGGATTGTACTCATTGCTAAAACCAACGTATCTTTTGGTGACGAGTTAACTTATGACTACTTATTTGATCCTGACGAGCCAGATGAATTTAAAGTCCCCTGCATGTGTAAAGCTTCGAGTTGCAGGAAATTCATGAATTAG 3156 0.4246 MIIKRELKSQMPRLKRCRLGDSVGEDEDCSYASKKRKTSGYYYPLNLLGDVAAGLIPASFHGLLSAGVSERSWCTQVPCSPGEVESKSKEEMVPVKKSQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWKKDGRTASRDCEVEGEFECKKDMVVTKPCNNNVRKGRNSGKICYKQRKYSALCEDEDFTVSGRRKSFGRRKDSALDDDEDDLGMGGDEIVGLKESNEEKKDGLYGPEDFYACDIVWAKAGRKEPLWPAVVIDPTKQAPELVLRSFIADAACVMFLGNAGNENQRDYAWVKHGMIFPFMDYVDRFQEQPELSNYSPSDFQMAIEEAFLADQGFTEKLINDINAAACATVYDDTVLKSSFREICGSNQYGRAGKHFLNQDLCEACGLTLSYKMSKKTNGLTPNGQLLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDQISRNHFKDLESTDYYCPTCRGKFDFELSDSEKSKTKVRSNRNNGQLVPSNKVTVLCNGVQGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWKTSITVKDSRLPLEQWMLQVAEVHANSLVSVKPKKPSLKERKQKLLTFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGVLNVKDFTSWVCKTCETPKIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSKKNGKTITKMVSYCAYHRAPNPDNVLILQTPLGVISTKSLLQKKKTGSRLISSNRIKQEETPIDITEHDPFSAARCRIFKRTNHTRKRASDEAVFHQARGHCHHPSDAIQSLNAYRTVKEPPAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRAEGKDCYLFKISEEVVVDATNKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSFGDELTYDYLFDPDEPDEFKVPCMCKASSCRKFMN 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02865 1051 ProSiteProfiles SET domain profile. 909 1026 IPR001214 GO:0005515
Vivi3g02865 1051 SUPERFAMILY SET domain 902 1048 IPR046341 -
Vivi3g02865 1051 FunFam Histone-lysine N-methyltransferase 670 789 - -
Vivi3g02865 1051 FunFam Histone-lysine N-methyltransferase 884 1051 - -
Vivi3g02865 1051 CDD PWWP_AtATX3-like 241 342 - -
Vivi3g02865 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 669 IPR013083 -
Vivi3g02865 1051 ProSiteProfiles Zinc finger PHD-type profile. 618 669 IPR019787 -
Vivi3g02865 1051 ProSiteProfiles Extended PHD (ePHD) domain profile. 672 787 IPR034732 -
Vivi3g02865 1051 Gene3D - 234 340 - -
Vivi3g02865 1051 SUPERFAMILY Tudor/PWWP/MBT 232 336 - -
Vivi3g02865 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 789 IPR013083 -
Vivi3g02865 1051 Pfam PWWP domain 241 333 IPR000313 -
Vivi3g02865 1051 SMART PHD_3 731 787 IPR001965 -
Vivi3g02865 1051 SMART PHD_3 620 667 IPR001965 -
Vivi3g02865 1051 SMART PHD_3 426 478 IPR001965 -
Vivi3g02865 1051 SUPERFAMILY FYVE/PHD zinc finger 425 481 IPR011011 -
Vivi3g02865 1051 ProSitePatterns Zinc finger PHD-type signature. 621 666 IPR019786 -
Vivi3g02865 1051 Pfam SET domain 920 1025 IPR001214 GO:0005515
Vivi3g02865 1051 Pfam PHD-finger 633 667 - -
Vivi3g02865 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 481 IPR013083 -
Vivi3g02865 1051 CDD ePHD_ATX3_4_5_like 675 786 IPR041955 -
Vivi3g02865 1051 SUPERFAMILY FYVE/PHD zinc finger 619 683 IPR011011 -
Vivi3g02865 1051 SMART set_7 909 1032 IPR001214 GO:0005515
Vivi3g02865 1051 Gene3D SET domain 804 1051 IPR046341 -
Vivi3g02865 1051 Pfam PHD-finger 426 478 IPR019787 -
Vivi3g02865 1051 ProSiteProfiles Post-SET domain profile. 1035 1051 IPR003616 -
Vivi3g02865 1051 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1051 IPR025780 -
Vivi3g02865 1051 CDD PHD_ATX3_4_5_like 620 666 IPR042011 -
Vivi3g02865 1051 ProSiteProfiles Zinc finger PHD-type profile. 424 480 IPR019787 -
Vivi3g02865 1051 CDD SET_SETD1-like 896 1047 - -
Vivi3g02865 1051 PANTHER PHD FINGER PROTEINS 12 514 - -
Vivi3g02865 1051 Pfam PHD-zinc-finger like domain 674 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02865 Vivi-Chr3 47662432 47671253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02865 621 786 C2H2 Transcription Factor Family AT3G14740 34.682 1.17e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g02865 zf-HC5HC2H_2 6.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02865 - - aprc:113853254 1724.52