Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02854 ATGGACTACGGTAGGTTAGGATTATCCGACCCTGGAGGTTCGACTCCCTCCGAACCTATAATTCATCCCAAACCGAGATCTTCCAAGAAGAAAATCATTTTCCTCTCTCTCCTCGCCGTGTTACTCATCGTTGCCTCCGCAGTTTCCGCCGCAATGCTCACTGGAGTCCACACCCGCCGCGGAAACCAGCATAAAAATCCGTCTCTCCGACGTAATCCAACACAAGCAATCTCTAGAACATGTAGCAAAACTCGTTTCCCTTCACTCTGCGAAACGTCTCTTCTCGAATACCCTGGATCCACAATCGCTACAGAGAAAGACCTTATCCACATTTCCCTCAACATGACGCTACAGCATCTCTCCAAAGCACTCTACTCCTCCGCCTCTATCTCCTCCACCATCGGCATGAACCCTCGCATCCGTGCCGCTTATCAAGACTGTCTCGAACTTCTTGACGACTCCGTCGACGCTGTCACTCGCGCATTGACCTCCGTCGTACCTTCCTCCTCCTCCAAAGGCTCCGTTAAGCCTCTTACCTCATCCTCCACTGACGATGTACTCACGTGGCTCAGCGCTGCACTTACCAACCAAGACACGTGCGCTGAGGGTTTTACCGACACTTCCGGTGCCGTGAAAGATCAGATTGCGAATAATATAAAGGACTTGTCGGAGCTAGTGAGTAATTGTTTAGCTATTTTCTCTAACTCCGGCGCCGGAGATGATTTCTCCGGTGTTCCTATACATAATAAAAGACGATTAATGACAATGCCAGAAAATGATTTTCCGATATGGTTGAGAAAACGAGAGAGAAGATTGTTGGACTTGCCGGTGTCTGCGTTACAGGCTGATGTGGTAGTTTCTAAAGACGGTAACGGAACAGTGAAAACTATATCGGAAGCTCTTAAAAAGATACCGGAGTACGGTAACCGACGCTTCATTATCTATATCAAAGAAGGAAGGTATGAAGAAGACAATTTAAAGATTGGGAGGAAGAAAACTAATGTTATGATCATGGGAGACGGAAAGGGAAAGACAGTGATCACAGGGGGCAAAAATGTTATGCAAAACTTGACCACATTTCACACTGCTTCCTTTGCTGCTAGTGGTCCAGGCTTCATTGCAAGAGACATGACATTCGAGAACTACGCCGGACCATCAAAGCACCAAGCGGTAGCCCTCCGCGTTGGATCAGATCACGCGGTGGTCTACCGCTGCAACATCATCGGATACCAAGACACAATGTATGCACATTCCAATCGTCAATTCTACCGCGAATGTGACATCTACGGTACCGTAGACTTCATATTCGGCAACGCTGCAGTTGTTTTTCAAAACTGCAGTCTCTACGCCCGAAAGCCCATGGCCCAACAGAAAAACACCATCACAGCCCAAAACAGAAAAGACCCGAATCAGAACACCGGTATATCCATCCATAACTGTAGAATCCTTGCCACACAAGATCTAGAAGCATCCAAGGGAAACTTCACAACGTATCTGGGCCGTCCATGGAAACTATACTCTAGAACGGTGTACATGTTATCATACATGGGGGATCATTTACATCCACGTGGGTGGTTAGAGTGGAATACAACATTTGCTTTAGACACATTGTATTATGGTGAATACATGAATTATGGGCCGGGTGGAGCTATTGGGAAACGGGTAACTTGGCCCGGGTTTCGGGTTATTACGTCCACCGTGGAAGCTAATAGATTCACGGTGGGTCAGTTCATATCGGGCTCGACTTGGTTGCCGTCTACTGGAGTGGCATACGTAGCTGGCTTAAATACCTAA 1794 0.4744 MDYGRLGLSDPGGSTPSEPIIHPKPRSSKKKIIFLSLLAVLLIVASAVSAAMLTGVHTRRGNQHKNPSLRRNPTQAISRTCSKTRFPSLCETSLLEYPGSTIATEKDLIHISLNMTLQHLSKALYSSASISSTIGMNPRIRAAYQDCLELLDDSVDAVTRALTSVVPSSSSKGSVKPLTSSSTDDVLTWLSAALTNQDTCAEGFTDTSGAVKDQIANNIKDLSELVSNCLAIFSNSGAGDDFSGVPIHNKRRLMTMPENDFPIWLRKRERRLLDLPVSALQADVVVSKDGNGTVKTISEALKKIPEYGNRRFIIYIKEGRYEEDNLKIGRKKTNVMIMGDGKGKTVITGGKNVMQNLTTFHTASFAASGPGFIARDMTFENYAGPSKHQAVALRVGSDHAVVYRCNIIGYQDTMYAHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHNCRILATQDLEASKGNFTTYLGRPWKLYSRTVYMLSYMGDHLHPRGWLEWNTTFALDTLYYGEYMNYGPGGAIGKRVTWPGFRVITSTVEANRFTVGQFISGSTWLPSTGVAYVAGLNT 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02854 597 PANTHER PECTINESTERASE 43 585 - -
Vivi3g02854 597 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Vivi3g02854 597 CDD PMEI-like_3 81 235 - -
Vivi3g02854 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 235 IPR035513 -
Vivi3g02854 597 Pfam Pectinesterase 283 580 IPR000070 GO:0030599|GO:0042545
Vivi3g02854 597 Pfam Plant invertase/pectin methylesterase inhibitor 76 232 IPR006501 GO:0004857
Vivi3g02854 597 FunFam Pectinesterase 277 595 - -
Vivi3g02854 597 FunFam Pectinesterase 73 236 - -
Vivi3g02854 597 SMART PMEI_2 72 232 IPR006501 GO:0004857
Vivi3g02854 597 Gene3D - 277 595 IPR012334 -
Vivi3g02854 597 SUPERFAMILY Pectin lyase-like 278 594 IPR011050 -
Vivi3g02854 597 MobiDBLite consensus disorder prediction 1 23 - -
Vivi3g02854 597 NCBIfam pectinesterase inhibitor domain 60 234 IPR006501 GO:0004857
Vivi3g02854 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 234 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02854 Vivi-Chr3 47524767 47528704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02854 1 596 Carbohydrate Esterase AT5G53370 63.000 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02854 - - gmx:100808236 871.692