Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02841 ATGGAGTTGAATAACATTGAGTGTGTTACGTCCTCAGATGGCATGGATGAAGATGAGATCCATCCTCATCATCACTCTGAGTTTTCTTCCACAAAGCATAGAAATGGTGCTGCAAATATCAATAATATTTTGGGTCCTAATGCCATTGCTCCTATAACCAGCGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCTATGTACCCTCCAATTCATCAGTGTCACAATGGTCACACACTATGTTCCACATGCAAAACACGGGTGCATAACCGATGTCCCACATGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCATTGGAGAAGGTGGCGGAATCACTCGAGTTACCGTGCAAGTACTACTCCCTTGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTTTGTAATTTTAGACCATATAGTTGTCCTTATGCTGGATCAGAGTGTTCCACTGTTGGCGATATTAACTTCCTTGTTGCTCATTTGAGGGATGATCATAAGGTCGACATGCACACCGGATGCACATTCAATCATCGTTATGTGAAGTCGAATCCTCGTGAAGTAGAGAACGCAACCTGGATGCTCACAGTATTTCATTGCTTTGGACAATATTTCTGCCTTCATTTCGAAGCTTTTCAGCTTGGCATGGCACCTGTTTACATGGCATTCCTTCGTTTCATGGGCGACGAGAATGAAGCTCGGAACTACAGTTATAGCCTGGAAGTTGGGGCCAATGGCAGGAAACTAATTTGGGAGGGTACACCTCGAAGTGTTCGGGATAGCCACCGAAAAGTCAGGGACAGCCATGATGGTCTCATAATTCAAAGAAATATGGCACTGTTTTTCTCAGGCGGGGATAGAAAGGAGCTGAAACTTAGAGTCACAGGAAGAATATGGAAGGAACAGAATCAAGATGCTGCAGTGTGCATACCTAATCTATGTAGCTGA 969 0.4355 MELNNIECVTSSDGMDEDEIHPHHHSEFSSTKHRNGAANINNILGPNAIAPITSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSTVGDINFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNQDAAVCIPNLCS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02841 322 MobiDBLite consensus disorder prediction 14 31 - -
Vivi3g02841 322 SUPERFAMILY TRAF domain-like 114 306 - -
Vivi3g02841 322 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 308 - -
Vivi3g02841 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 165 IPR013083 -
Vivi3g02841 322 MobiDBLite consensus disorder prediction 12 32 - -
Vivi3g02841 322 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Vivi3g02841 322 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 302 IPR008974 GO:0005515
Vivi3g02841 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 113 IPR013083 -
Vivi3g02841 322 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Vivi3g02841 322 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vivi3g02841 322 CDD Sina 175 303 - -
Vivi3g02841 322 FunFam E3 ubiquitin-protein ligase SINAT3 11 112 - -
Vivi3g02841 322 SUPERFAMILY RING/U-box 52 101 - -
Vivi3g02841 322 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Vivi3g02841 322 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Vivi3g02841 322 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02841 Vivi-Chr3 47381460 47383952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02841 27 309 C3H Transcription Factor Family AT2G41980 75.265 4.72e-162 452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02841 3 47381460 47383952 Vivi3g02841 3 47381460 47383952 ECH