Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02811 ATGTATGAGACTCTTTCTGAGTCCTCACTCCTCACTAACACAAACATCACATATAATTGGATACTCTCATTCTGCTCCCATCCTCACATACTCTTCCTGAGGATGATAGCTCCAGCTCAGCCCCCTATGCACCACAACCAGGCCCCATCTTCACCTTTCTCAGCAAACTCCCCTGCAGTAGACTTCAGTCCACCCCTAATAGCAATGGTTGTCGTCGTCGCCGCCGCCTTCGTCATTGTAACCTACTCCCGCCTCCTCACCCGCCACCTCTCGCCTCCCATCCACCGCCTTATCCAACGCTTCCATAGCCGGCGTTTCCTCCCTCCCTCCTCCTCATTAGGCGACATCGAATCACTCCAATACGAATCATCAACGTTCGAAGCCCCACACACTTTCGGCTTAGACGAATCCATCATCAAAACCATTCCGTTCTTCATCTACACAACGAAATACGAACAAGAGTCTCTCCGTGACTGCGCCGTTTGTTTACTTGAATTCGAAGATCATGATTATGTACGCACTCTACCTCTATGTTCGCACACTTTTCATCTTGATTGTATCGACGCTTGGCTTCGTTCACACGCTAACTGTCCTCTCTGTCGCGGTGTTCTTCTCTGTGAGTCTCCTTTCAGACCTCTCATGGCCGCTAGAATCCGTCCATCGTTTCACGACCAAACTAATATTCTCCACCTCGATACGGTTCAACCGGTGCCGGAGATTACTCCTCATTCTCCTGTTATGAGTAATACCGACGAGAATCAGTTTAACAGACGGGATGATTTTCTGTTGAAACGCTCTTATTCGTTTGGTTTTGAAAGGAGTTTGCCGTCGGAGAGAATGGTAACCGACCCTGCCGCGACCTCTCCGTGGCGGTACCGGAGAGGGAACAACAGTTTCTGGAGCAAAAGACCGTCTCCGTTTGGTTCGTTAGGGAAGTCGAGAGTGTTTTCATTCAGATATTACAGAGGAATGAAATCACCATTTTTCCGCCGGAGAGGATTCTTCCCGTTGTCGGAGTCAAGTAATAGGTACGCCGACGGAGGAAGCTCGTGGCGGAGGAGCAAGTCAATAGCAAGTCCAATGTTCTTGAGATCATCAGCGGCAGTATTCTCGTCAAGCCGTTTAAGATGCGGCGATCCCGAAGCGTTACTATCGCCGGAGAGATTCAACCGTCGACGATGA 1182 0.4975 MYETLSESSLLTNTNITYNWILSFCSHPHILFLRMIAPAQPPMHHNQAPSSPFSANSPAVDFSPPLIAMVVVVAAAFVIVTYSRLLTRHLSPPIHRLIQRFHSRRFLPPSSSLGDIESLQYESSTFEAPHTFGLDESIIKTIPFFIYTTKYEQESLRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRGVLLCESPFRPLMAARIRPSFHDQTNILHLDTVQPVPEITPHSPVMSNTDENQFNRRDDFLLKRSYSFGFERSLPSERMVTDPAATSPWRYRRGNNSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSNRYADGGSSWRRSKSIASPMFLRSSAAVFSSSRLRCGDPEALLSPERFNRRR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02811 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 205 IPR013083 -
Vivi3g02811 393 FunFam RING-H2 finger protein ATL65 127 205 - -
Vivi3g02811 393 Pfam Ring finger domain 158 201 IPR001841 -
Vivi3g02811 393 SMART ring_2 159 200 IPR001841 -
Vivi3g02811 393 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Vivi3g02811 393 PANTHER RING-H2 FINGER PROTEIN ATL16 41 216 IPR044600 GO:0016567|GO:0016740
Vivi3g02811 393 SUPERFAMILY RING/U-box 138 210 - -
Vivi3g02811 393 CDD RING-H2_EL5-like 158 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02811 Vivi-Chr3 47045932 47047999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02811 55 392 C3H Transcription Factor Family AT3G18930 49.476 2.97e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02811 - K19041 gmx:100795347 484.182