Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02785 ATGGGTAGTTTCAGTGGAGATGAGGATTGTCAGTTTTTTGATGCTCAAGAGGATGTTTTGTCAATTGGGTATGCAAATTCTGATGATGATAATGATAGAAGTGTATCTGTTGATTTTGATTATGATGTGTGGATTCGGAGACCGAGGAGTGTGAGGGAGCGAAGAGGGGAGTTTATGAAGAGCATGGGAATGAGTTTAGATGGAATTGTTGTTGAAAATTTATTGGATGTTGAGAAGGAAGAGATTATAGATAGAGTAAGAGGAAGTAGTGGTTGTGAAGAGGAATTTAGTTCGAGTCGGTTGTTGATGTCTTGTTGCTCTAGTATGAGTTTTTCAGAGGAGGATAGTAATAACTTACCATGTCAAAATGAAAGTTTGGAGATAGGAGTAGGGACTAATGTCGATAAAAAGGAGGAACAAAAGAAGCATGTGAAGGTGAATGATGATTCAGATCATTTGGTGGTTGCTAGGAAATCTGAGGATTCCGTGAATGTTAATGTTTCGGGGGTGTCTCCTTCTCAAGGAATGGTAGGTAGAGATTTTGAGGATTCAGATGGTGATGCGGTTACTGGAATCTTAAATAGGGTGAAAAGGGGTTGGTTAAGAAGATTGAGATCGATGACGTGCATGGTTGATACACAAGGGGAAGGCGATGATCATAATGGGAGAGGAGAAGGGAGAATGTCAGTCTCAGGGTCAGGGTGTAGGCTTCAGAAAGTAAAGGTCCGTCAAAGTAAGAAAAAAACCAAGGAGCTTTCTTCACTTTACTTGAGGCAAGATATCCAAGCGCACGAAGGTTCAATTTTGACAATGAAATTCAGTCCCGATGGACAGTATCTAGCCACTGGCGGAGAAGATTGTGTAGTTCGTGTGTGGCAAGTAGTTGAGGAGGATAGATGTAATGAAATTCACATTCCAGAAATTGACCCTTCATGCATTTACTTTACGGTGAATAATCTTTCTCAATTGACACCATTGTTTATGGATAAGGAAAAACTTAACCAACTGAAGAGCATGAGGAAAACATCAGATTCTGCTTGTGTCGTTTTCCCGCCTAAGATCTTCCGGTTGCTGGAAAAACCATTGCACGAGTTCCGTGGTCATAGTAGTGAAGTTTTGGATCTATCTTGGTCAAAGAAGAATTATCTTCTCTCATCGTCGGTTGACAAAACTGTCCGACTATGGAAAGTGAATCATGAGCATTGCTTGAAAGTGTTTTCACACAGTAATTATGTGACATGTATACAATTCAATCCTGTGGATGAAGATTATTTCATTAGCGGATCCATAGACGGGAAAGTGCGAATATGGGAAATTCCTGATTGTCAGGTTGTTGACTGGACTGATGTCCTAGATATAGTGACTGCAGTATGTTATCGGCCCGATGGACAGGGAGGGATTGTTGGTTCTTTGGCAGGAAATTGTCGGTTTTATAAAATATCAGATAATCACTTGCAGTTAGATTCTCAACTATGCTTAATTGGTAAAAAGAAACTTCCTGGCAGAGGGATATTGGGCTTTCAGTTTCTTCCTCAAGACTCGAACAAAGTTATGGTTACCTGTGCTGATTCACAAGTTAGAATCCTTGATGGGCTTAATGTGATTTGTAAATACAAAAGCCTCAACACAGGGAGTCCAATGTGTGCATCCTTTACTTCAGACGGGAAACATATTTTATCCGCATGCGAGGACTCAAATGTATATCTATGGAACATTGATCAGGAAGAGTCTAATGCCACGAAATCTAAGAAAATTAGGTCATGTGAGCGGTTTTTCTCAAATGCATCCGTTGCAGTACCTTGGCATGGTTTGAAACCTCAAGTTACTGAAAATGAACAGTTGAATGTCTCGGATAAAAAATCACCTCGAGCTGCTCTACAATTACACTCCACTCCACCTGCATCTTTCTCTTTAGGCCAAGAATATTTCTTGGAGTCTTTTCCGAAGGGATCTGCTACCTGGCCTGAGGAGAAGCTTCCTGTTTCAAGCTCCAAGGCTAAAAAAACATCATTTATGCACAACTCCGAATACAAGTTCTTGAAATCTTCTTGCAAGAGCACCAACCGCGCTCACGCCTGGGGTATGGTTATCGTGACTGCAGGCTGGGACGGGAGGATAAAATCATTCCAAAATTACGGGCTACCTGTACCGGTTTGA 2157 0.4112 MGSFSGDEDCQFFDAQEDVLSIGYANSDDDNDRSVSVDFDYDVWIRRPRSVRERRGEFMKSMGMSLDGIVVENLLDVEKEEIIDRVRGSSGCEEEFSSSRLLMSCCSSMSFSEEDSNNLPCQNESLEIGVGTNVDKKEEQKKHVKVNDDSDHLVVARKSEDSVNVNVSGVSPSQGMVGRDFEDSDGDAVTGILNRVKRGWLRRLRSMTCMVDTQGEGDDHNGRGEGRMSVSGSGCRLQKVKVRQSKKKTKELSSLYLRQDIQAHEGSILTMKFSPDGQYLATGGEDCVVRVWQVVEEDRCNEIHIPEIDPSCIYFTVNNLSQLTPLFMDKEKLNQLKSMRKTSDSACVVFPPKIFRLLEKPLHEFRGHSSEVLDLSWSKKNYLLSSSVDKTVRLWKVNHEHCLKVFSHSNYVTCIQFNPVDEDYFISGSIDGKVRIWEIPDCQVVDWTDVLDIVTAVCYRPDGQGGIVGSLAGNCRFYKISDNHLQLDSQLCLIGKKKLPGRGILGFQFLPQDSNKVMVTCADSQVRILDGLNVICKYKSLNTGSPMCASFTSDGKHILSACEDSNVYLWNIDQEESNATKSKKIRSCERFFSNASVAVPWHGLKPQVTENEQLNVSDKKSPRAALQLHSTPPASFSLGQEYFLESFPKGSATWPEEKLPVSSSKAKKTSFMHNSEYKFLKSSCKSTNRAHAWGMVIVTAGWDGRIKSFQNYGLPVPV 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02785 718 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 439 IPR001680 GO:0005515
Vivi3g02785 718 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 439 - -
Vivi3g02785 718 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 405 IPR001680 GO:0005515
Vivi3g02785 718 SUPERFAMILY WD40 repeat-like 255 709 IPR036322 GO:0005515
Vivi3g02785 718 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Vivi3g02785 718 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
Vivi3g02785 718 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Vivi3g02785 718 ProSitePatterns Trp-Asp (WD) repeats signature. 558 572 IPR019775 -
Vivi3g02785 718 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Vivi3g02785 718 SMART WD40_4 254 293 IPR001680 GO:0005515
Vivi3g02785 718 SMART WD40_4 531 571 IPR001680 GO:0005515
Vivi3g02785 718 SMART WD40_4 440 479 IPR001680 GO:0005515
Vivi3g02785 718 SMART WD40_4 399 438 IPR001680 GO:0005515
Vivi3g02785 718 SMART WD40_4 490 530 IPR001680 GO:0005515
Vivi3g02785 718 SMART WD40_4 358 396 IPR001680 GO:0005515
Vivi3g02785 718 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 294 IPR001680 GO:0005515
Vivi3g02785 718 Pfam WD domain, G-beta repeat 262 292 IPR001680 GO:0005515
Vivi3g02785 718 Pfam WD domain, G-beta repeat 401 437 IPR001680 GO:0005515
Vivi3g02785 718 Pfam WD domain, G-beta repeat 360 396 IPR001680 GO:0005515
Vivi3g02785 718 PANTHER WD REPEAT DOMAIN 44 7 715 IPR040324 -
Vivi3g02785 718 Gene3D - 497 710 IPR015943 GO:0005515
Vivi3g02785 718 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 580 IPR001680 GO:0005515
Vivi3g02785 718 Gene3D - 354 496 IPR015943 GO:0005515
Vivi3g02785 718 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 398 - -
Vivi3g02785 718 Gene3D - 224 310 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02785 Vivi-Chr3 46679057 46683462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02785 261 419 U-box Gene Family AT2G33340 22.995 3.26e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02785 - - gmx:100817209 952.97