Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02757 ATGACCGATACAAAGTTCCTGCAAGAGATATTGCTGTACGCAGCTAGGGCGGCGCTGAGTTATTGGGTATTGGTCACAGGACTCCGATACCTTGACCCTAACCGTGAATCAACCAAGAAAGCTCTTGAACAAAAGAAACAAATTGCCAAGCGTCTAGGTCGCCCCCTCATTCAAACCAATCCCTACGAGGATGTAATAGCCTGTGATGTTATAAACCCTGACCATATTGATGTGGAGTTTGACTCCATTGGGGGACTGGAAACTATTAAACAAGCTTTGTTTGAGCTTGTTATTCTGCCCTTGAAACGGCCCGACTTGTTTTCGCATGGCAAGCTTCTTGGACCACAAAAGGGGGTTTTGTTGTACGGACCTCCTGGCACTGGGAAAACCATGCTTGCTAAAGCTATTGCCAAGGAGTCCGGAGCAGTGTTCATTAATGTGAAGATATCTAACCTCATGAGCAAATGGTTTGGGGATGCCCAGAAACTTGTGTCTGCCGTATTTAGCTTGGCTGATAAGCTTCAGCCTGCCATCATATTCATCGATGAAGTTGACAGTTTTTTGGGTCAACGCCGTTCATCAGATCACGAGGCTATGCTAAATATGAAAACCGAGTTCATGGCTCTATGGGACGGATTCACCACCAACAAGAATGCTCGAGTTATGGTACTTGCAGCAACTAATCGCCCTTCTGAACTTGACGAAGCAATACTACGGCGACTTCCTCAAGCTTTTGAAATTGGATATCCAAGCCGGAAAGAGAGGGCTGAGATATTGAAGGTTATCTTAAAGGGGGAAAGTATCGAAAACAACATAGATTTCAATCATATAGCGGGATTATGTAAGGGTTACACTGGTTCAGATCTATTCGATCTTTGCAAGAAGGCTGCATATTTTCCTGTTAGAGAGCTACTGGATAATGAAAAGAGAGGGAAACAAACTCATGAACCTAGACCATTATCGCAATTAGATTTGGAGAAGGCCCTTGCCACTTCACAGAAGACAACCGTTGCTGCAAATGAATACGATAGAATGAACCAACAGTCATCATCAAGACGGACGTTTCCCGATGAGGGTGATTTTGATGTTCAAGCTGCAATCAAGGAAATCTCTAAGCTTATGGGTTCCCACATGATTAACCTCCAATTAGATTCCCAGGATGCTTAA 1167 0.4404 MTDTKFLQEILLYAARAALSYWVLVTGLRYLDPNRESTKKALEQKKQIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFDSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVKISNLMSKWFGDAQKLVSAVFSLADKLQPAIIFIDEVDSFLGQRRSSDHEAMLNMKTEFMALWDGFTTNKNARVMVLAATNRPSELDEAILRRLPQAFEIGYPSRKERAEILKVILKGESIENNIDFNHIAGLCKGYTGSDLFDLCKKAAYFPVRELLDNEKRGKQTHEPRPLSQLDLEKALATSQKTTVAANEYDRMNQQSSSRRTFPDEGDFDVQAAIKEISKLMGSHMINLQLDSQDA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02757 388 SMART AAA_5 115 251 IPR003593 GO:0016887
Vivi3g02757 388 Pfam ATPase family associated with various cellular activities (AAA) 119 248 IPR003959 GO:0005524|GO:0016887
Vivi3g02757 388 Gene3D - 250 330 - -
Vivi3g02757 388 Pfam AAA+ lid domain 271 306 IPR041569 -
Vivi3g02757 388 FunFam ATPase family AAA domain-containing protein 1 77 254 - -
Vivi3g02757 388 ProSitePatterns AAA-protein family signature. 221 240 IPR003960 GO:0005524|GO:0016887
Vivi3g02757 388 CDD RecA-like_ATAD1 82 247 - -
Vivi3g02757 388 Gene3D - 77 336 IPR027417 -
Vivi3g02757 388 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 24 348 - -
Vivi3g02757 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 307 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02757 Vivi-Chr3 46279912 46286807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02757 78 309 Calmodulin-binding Proteins AT3G56690 34.874 4.27e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02757 K22530 - gmx:100796908 635.95