Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02747 ATGATGGAGGAGAGAGAGAATATTCTTCATGAAGGTGTTGAATTGGAGACATCATCATCTTTGAATTCAAGGAAGAAAAACAAGAAGGTGGAGAATAAAAGAAGGTTTAGTGATGAACAGATAAGGTCACTGGAATGTATATTTGAGTCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAGCTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGAGCTAGGTGGAAATCAAAGAGGATTGAACAAGAGTATAGAAAACTTAAAGTTGAATATGATACTTTAGCTTTGAAGTTTCAGTCTCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCTCATGAAGGTGGAAGGGAAGGTAAGGAGAATAGTACAGAAGATGGTGGATCAGGAAATGGATATAGAAACTGTATAGCTGAAACAAAGGAAAGGTTTTCAAATGAGGGTTTGGAGGACAGAATGGTAATTTACTCAGATGATCAAGATGAAAGAGGTTTAACAAGGACTGAGAAAGTTGATGACAGAGAGAATCAGGTTTTGAGAAATGAAGAAATTCCTTTGACAGCACTTGAAAAATGGTACAATGTTGATCCAAGTGTTATCTTAGACCAGTCATGCAGTAGTTCTCAATGGTTGGATTTTTGGACTTAG 705 0.3702 MMEERENILHEGVELETSSSLNSRKKNKKVENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKVEYDTLALKFQSLKEEKESLQSEVQKLSYMVETSHEGGREGKENSTEDGGSGNGYRNCIAETKERFSNEGLEDRMVIYSDDQDERGLTRTEKVDDRENQVLRNEEIPLTALEKWYNVDPSVILDQSCSSSQWLDFWT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02747 234 Pfam Homeodomain 33 85 IPR001356 GO:0003677
Vivi3g02747 234 SMART HOX_1 30 91 IPR001356 GO:0003677
Vivi3g02747 234 MobiDBLite consensus disorder prediction 130 151 - -
Vivi3g02747 234 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Vivi3g02747 234 MobiDBLite consensus disorder prediction 1 34 - -
Vivi3g02747 234 ProSitePatterns 'Homeobox' domain signature. 62 85 IPR017970 GO:0000981|GO:0006355
Vivi3g02747 234 Gene3D - 21 96 - -
Vivi3g02747 234 PRINTS Lambda-repressor HTH signature 58 67 IPR000047 GO:0003677
Vivi3g02747 234 PRINTS Lambda-repressor HTH signature 67 83 IPR000047 GO:0003677
Vivi3g02747 234 CDD homeodomain 33 88 IPR001356 GO:0003677
Vivi3g02747 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 164 IPR045224 GO:0003700
Vivi3g02747 234 Coils Coil 79 127 - -
Vivi3g02747 234 SUPERFAMILY Homeodomain-like 17 87 IPR009057 -
Vivi3g02747 234 FunFam Homeobox-leucine zipper protein ATHB-7 15 87 - -
Vivi3g02747 234 Pfam Homeobox associated leucine zipper 87 127 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02747 Vivi-Chr3 46183858 46185401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02747 24 234 Homeobox Transcription Factor Family AT2G46680 38.683 2.06e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi3g02747 Homeodomain 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02747 K09338 - gmx:100499926 298.901