Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02728 ATGATCCATGTACATCATATTTTGTTCTTATATTTCCTACTTCATAATTTTCATTTCATCATTTGCATCAGCAATAACACAGACAGAGATATACTTCTATCTTTCAAATTACAGCTAACTGATCCAAACAGTGCTTTGGCCAGTTGGAGACAAGATTCTAATCATTGTACCTGGTATGGAGTCAACTGTTCCAAAGCTGGTGAAAGAGTTCAATCTCTCACCTTATCAGGACTTGGCCTCTCTGGTAAACTACCTTCTAATCTCTCCAACCTCACTTACCTTCATTCACTTGACCTTTCCAACAACACTTTTCATGGTCAAATTCCCTTCCAATTTTCTCATCTCACATTCCTCAATGTCATTCATTTAGCTCTCAATAATCTCTCGGGTACACTTCCATCACAACTTGGTCAACTTCACAATCTACAAAGTTTAGACTTTTCTGTCAATAATCTCACAGGTGAAATTCCTTCAACTTTTGGCAATCTCATTTCTCTTGAGAATCTTTCTTTGGCAAATAACAAGTTTGTTGGTGAGATTCCAATAGAATTGGCCAATCTCCGTAATCTCTCAACACTTCAACTGTCAGTAAACAATTTCAGTGGCAAATTTCCTTCTTCTATTTTCTTCAACCTCTCTTGCTTAGTTTACTTATCTCTCACACAGAACAATCTATCAGGCCAGTTGCCGCAAAATTTCAGCAACGCCTTTCCAAATTTAACCACACTTGTTCTTGCAACTAATAGGTTTGAAGGGGTGATTCCAAATTCTATATCCAATTTATCACATCTTCAAGCTATTGATCTTGCTAACAATAGATTTCATGGGCCAATGCCTCTTTTCAACAATCTGAAAAACCTCACTCGTTTGACACTAAGTAATAACTTTCTCACTTCCACAACATCATTGAATTTACAGTTCTTTGATTCACTTAGAAACTCAACTCAGTTGCAAATTCTTATGGTCAATCATAACAACTTGGCTGGGGAACTTCCAAATTCTGTTGCCTATCTTTCAGGCAATCTACAACAGTTCTGTGTTTCGAATAATCAGCTAAATGGAAGCATTCCTAAAGGAATGAAAAAGTTTCAAAATCTCACATCCTTCTCTTTTGAATGGAATAATTTCACTGGAGAGTTCCCAATAGAACTTGGAACACTCAAGAAATTGCAGCAGCTTTGGATACACCAAAATAGATTGTTTGGCGAAATTCCAGACATATTTGGAAATCTTACAAATCTGTATAATCTTGGAATAAGAAACAACCAGTTCTCAGGTAGAATTCCCGCGAGCATTGGACAATGCAAGAAGTTGATTTATCTTGACTTGGGAATGAATAAGCTTGTCGGTGTCATACCAATGGAGATTTTTCAACTCTCTGGATTGACAACTTTGTACTTACGGGGAAACTCTTTGAATGGTTCGCTTCCTCCTGAAATCAACATGGAACAGCTAATGATCATGATTGTTTCAGACAACAACCTGTCGGGGAACATTTCTAAAATTGAAGTAAACGGATTGAAGGTACTTCAGATGGCAAGAAATAAATTTAGTGGCTCAATTCCAAATAGTCTAGGAGATTTAGCATCCCTTGAGAATTTGGATCTATCATCAAACAATCTCTCTGGTCCAATTCCTGAGAGTTTGGAAGAGCTTAAGTATATGGTGAGTTTAAATTTGTCTTTCAACAAATTGGAAGGAGAGGTTCCAATGAAAGGTGTTTTTACGAACCTAAGCCAGGTTGATCTCCAAGGTAACAACAGATTATGCGGCCTTAACAATCAAGTTATGCAAAAGTTGGGAGTCACTTTGTGTGTTGCAGGTAAAAAGCACAAGAGAAACAGTTTGCTCCTTATCATACTACCAATTATCGGTGCAAGTATTGTTTTGTTCGTTTCAATGCTTTCTTTGCTGTGGATGCTATATTCCTTTAAGACGAAAAAAAAGGAGGATAAAAGAAGTTTGTCATCAACTCCTCTAAAGGGTTTGCCTCAAAATATATCCTATGGTGATATTAAGCTTGCTACAAACAATTTTTCAGCTACAAACTTGGTTGGAAAAGGAGGCTTTGGTTCTGTTTACAAGGGAGTGTTCAACCTTAGCACTTACGAAAGTCAAACCACCACACTTGCTGTTAAAGTTTTTGACCTGCAACAAAGCAAAGCTTGTCAGAGTTTTAGTGCAGAATGTGAAACTTTGAAAAATGTTAGGCATCGGAATCTTGTCAAGGTGATCACTTCTTGTTCTAGTACTGATCACAAAGGGGATGATTTTAAGGCTCTTGTTATGCATTTCATTCCTAATGGTAATTTGGAGATGAGTTTATACCCAGAAGATCTCGAGTCGGGATCTTCACTAACCTTGTTGCAGAGGTTAAACATTGCTATTGATGTTGCATCTGCCATGGACTATTTGCACCATGATTGTGATCCACCAATAGTCCATTGTGATCTTAAACCACTCAACGTCCTACTAGATGAAGATATGGTTGCACATGTAGCAGATTTTGGGTTGGCGAGGTTTCTCTCTCAAAATGCATCAGAGAAACACAGCAGCACTCTACAACTGAAGGGGTCAATCGGGTATATTGCCCCAGAATATGGTCTAGGAGGCAAGGCTTCAACTAGTGGTGATGTCTACAGTTTTGGGATCCTACTACTAGAGATGTTGATAGCCAAAAAACCAACAGATGAAATGTTCAAAGAAGGATTAAACATGAACAACTTTGTATCAGAAATGGATGCAAACCAATTACTGAATGTTGTTGATCAAAGGCTTATTAACCATCATGAATCTTCGATACAAAATTTCAGCAGCGACAGTCATAGTGGTGGATTCGGCGACATCAGCTATACTGATGGAAGTAACACATACTGGACTCAAAAAGCTGAGGAGTGCATAGCTGCTGCAATGAGAATTGGCTTGTCTTGTGTAGCACATCATCCCAAAGATAGGTTGACAATGAGAGAAGCCTTATCAAAATTGCATGGAATTAAGCAGTCTGTTCTTGGCTTGTGA 3018 0.3804 MIHVHHILFLYFLLHNFHFIICISNNTDRDILLSFKLQLTDPNSALASWRQDSNHCTWYGVNCSKAGERVQSLTLSGLGLSGKLPSNLSNLTYLHSLDLSNNTFHGQIPFQFSHLTFLNVIHLALNNLSGTLPSQLGQLHNLQSLDFSVNNLTGEIPSTFGNLISLENLSLANNKFVGEIPIELANLRNLSTLQLSVNNFSGKFPSSIFFNLSCLVYLSLTQNNLSGQLPQNFSNAFPNLTTLVLATNRFEGVIPNSISNLSHLQAIDLANNRFHGPMPLFNNLKNLTRLTLSNNFLTSTTSLNLQFFDSLRNSTQLQILMVNHNNLAGELPNSVAYLSGNLQQFCVSNNQLNGSIPKGMKKFQNLTSFSFEWNNFTGEFPIELGTLKKLQQLWIHQNRLFGEIPDIFGNLTNLYNLGIRNNQFSGRIPASIGQCKKLIYLDLGMNKLVGVIPMEIFQLSGLTTLYLRGNSLNGSLPPEINMEQLMIMIVSDNNLSGNISKIEVNGLKVLQMARNKFSGSIPNSLGDLASLENLDLSSNNLSGPIPESLEELKYMVSLNLSFNKLEGEVPMKGVFTNLSQVDLQGNNRLCGLNNQVMQKLGVTLCVAGKKHKRNSLLLIILPIIGASIVLFVSMLSLLWMLYSFKTKKKEDKRSLSSTPLKGLPQNISYGDIKLATNNFSATNLVGKGGFGSVYKGVFNLSTYESQTTTLAVKVFDLQQSKACQSFSAECETLKNVRHRNLVKVITSCSSTDHKGDDFKALVMHFIPNGNLEMSLYPEDLESGSSLTLLQRLNIAIDVASAMDYLHHDCDPPIVHCDLKPLNVLLDEDMVAHVADFGLARFLSQNASEKHSSTLQLKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEMLIAKKPTDEMFKEGLNMNNFVSEMDANQLLNVVDQRLINHHESSIQNFSSDSHSGGFGDISYTDGSNTYWTQKAEECIAAAMRIGLSCVAHHPKDRLTMREALSKLHGIKQSVLGL 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02728 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 185 - -
Vivi3g02728 1005 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Vivi3g02728 1005 Coils Coil 1003 1005 - -
Vivi3g02728 1005 FunFam LRR receptor-like serine/threonine-protein kinase EFR 302 611 - -
Vivi3g02728 1005 SUPERFAMILY L domain-like 340 593 - -
Vivi3g02728 1005 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Vivi3g02728 1005 Pfam Protein tyrosine and serine/threonine kinase 682 902 IPR001245 GO:0004672|GO:0006468
Vivi3g02728 1005 Gene3D Transferase(Phosphotransferase) domain 1 766 1003 - -
Vivi3g02728 1005 PANTHER OS04G0122200 PROTEIN 178 999 - -
Vivi3g02728 1005 SMART LRR_typ_2 187 211 IPR003591 -
Vivi3g02728 1005 SMART LRR_typ_2 411 435 IPR003591 -
Vivi3g02728 1005 SMART LRR_typ_2 284 310 IPR003591 -
Vivi3g02728 1005 SMART LRR_typ_2 139 162 IPR003591 -
Vivi3g02728 1005 SMART LRR_typ_2 237 260 IPR003591 -
Vivi3g02728 1005 SMART LRR_typ_2 459 483 IPR003591 -
Vivi3g02728 1005 SMART LRR_typ_2 528 552 IPR003591 -
Vivi3g02728 1005 SMART LRR_typ_2 387 410 IPR003591 -
Vivi3g02728 1005 SMART LRR_typ_2 212 235 IPR003591 -
Vivi3g02728 1005 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Vivi3g02728 1005 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Vivi3g02728 1005 Pfam Leucine rich repeat 412 472 IPR001611 GO:0005515
Vivi3g02728 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 766 1004 - -
Vivi3g02728 1005 ProSitePatterns Protein kinases ATP-binding region signature. 685 713 IPR017441 GO:0005524
Vivi3g02728 1005 SUPERFAMILY L domain-like 23 299 - -
Vivi3g02728 1005 Gene3D Phosphorylase Kinase; domain 1 661 765 - -
Vivi3g02728 1005 Gene3D Ribonuclease Inhibitor 282 600 IPR032675 -
Vivi3g02728 1005 SUPERFAMILY Protein kinase-like (PK-like) 655 995 IPR011009 -
Vivi3g02728 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Vivi3g02728 1005 ProSiteProfiles Protein kinase domain profile. 679 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02728 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 208 301 - -
Vivi3g02728 1005 Pfam Leucine Rich Repeat 530 552 IPR001611 GO:0005515
Vivi3g02728 1005 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Vivi3g02728 1005 Gene3D Ribonuclease Inhibitor 181 281 IPR032675 -
Vivi3g02728 1005 SMART LRR_sd22_2 212 235 - -
Vivi3g02728 1005 SMART LRR_sd22_2 528 551 - -
Vivi3g02728 1005 SMART LRR_sd22_2 387 413 - -
Vivi3g02728 1005 SMART LRR_sd22_2 284 305 - -
Vivi3g02728 1005 SMART LRR_sd22_2 139 171 - -
Vivi3g02728 1005 SMART LRR_sd22_2 339 368 - -
Vivi3g02728 1005 ProSiteProfiles Leucine-rich repeat profile. 530 553 IPR001611 GO:0005515
Vivi3g02728 1005 FunFam LRR receptor-like serine/threonine-protein kinase EFR 649 765 - -
Vivi3g02728 1005 SMART serkin_6 679 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02728 Vivi-Chr3 45769724 45773186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02728 24 1000 Receptor kinase-like Gene Family AT3G47570 39.863 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi3g02728 PK_Tyr_Ser-Thr 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02728 - - mtr:11428205 1567.36