Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02727 ATGATCCATGTACATCATATTTTGTTCTTATGTTTCCTACTTCATAATTTTCATTTCATCATTTGCATCACCAATAACACAGACAGAGATATCCTTCTATCTTTCAAATTACAACTAACTGATCCAAACAATGTTCTGTCAAATTGGACAACAGATTCAAATCACTGTACCTGGTATGGAGTCAACTGTTCCAAAGCTGGTGAAAGAGTTCAATCTCTCACCTTATCAGGACTTGGCCTCTCTGGTAAACTACCTTCTAACCTCTCCAACCTCACTTCCCTCCTTTCACTTAACCTTTCCAATAACACTTTTCATGGTCAAATTCCCTTCCAATTTTCTCATCTCACACTCCTCACTGTCATTCAATTAGCTCGCAACAATCTATCAGGTACACTTCCACCACAATTAGGCCAACTGCATAATCTACAAAGTTTGGACTTTTCTGTCAATAATCTCACAGGTGAAATCCCTTCAACTTTTGGCAATCTCATTTCTCTTGAGAGTCTTTCTATGGCAAGGAACAAGTTTGTTGGTGAGATTCCAATTGAATTGGCCAATCTCCGTAATCTTTCAACACTTCAACTCTCAGAGAACAATTTCTCTGGCAAGTTTCCTACTTCTATTTTCCTCAACCTCTCTTCCTTAGTTTTCTTATCCCTCACGCTGAACAATCTATCAGGCGAGTTGCCGCAAAATATTGGCAACGCCCTTCCAAATTTAACCACACTTGCTATTGCAACCAATAGGTTTGATGGAGTGATTCAAAATTCTATATCCAATTCATCACATCTTCAAACTATTGATCTTTCTAACAATAGATTTCATGGGCCAATACCTCTTTTCAACAACCTGAAAAACCTCACTATTTTGACACTAGCTAATAACTTTCTCACTTCTACAACATCATTGAATCTACAGTTCTTTGATTCACTTAGAAACTCCACTCAGTTGCAAATCCTTAAGGTCAATTATAACAACTTGACCGGTGAACTTCCGAATTCTGTTGCCTATCTTTCAAGCAATCTACAGCAGTTTTGTGTTTCTAATAATCAACTAAATGGTAGCATTCCTAAAGGAATGAACAAGTTTCAAAATCTCACATCCTTCTCTTTTGAATGGAATAATTTCACTGGAGAGTTCCCAATGGAACTTGGAACACTCAAGAAATTGCAGCAGCTTTGGATACACCAAAATAGATTGTTTGGCGAAATTCCAGACATATTTGGAAATTTTACAAATCTGTATCAAATTGCAATGAGAAACAACCAGTTCACAGGTAGAATTCCCGCGAGCATCGGACAATGCAAGAGCTTGAATTATCTTGACTTGGGAATGAATAGGCTTGTCGGTGTCATACCAATGGAGATTTTTCAACTCTCTGGATTGAGAACTTTGTACCTACGTGGAAACTCGTTGAATGGTTCGCTTCCTCCTGTACTCAACATGGAGCAGTTAGAGGTCATGATTGTTTCGGACAACAAGCTATCGGGGAACATTTCTAACATCGAAGCAAACGGATTGAAGGTACTTCAGATGGCAAGAAATAAATTTAGTGGCTCAATTCCAAATAGTCTAGGAGATTCAGCATTTCTTGAGACTTTGGATCTATCATCAAACAATCTCTCTGGTTCAATTCCTGAGAATTTAGAAGAGCTTAAGTATTTGGTGAGTTTAAATTTGTCTTTCAACAAATTGGAAGGAGAGGTTCCAATGAAAGGTGTTTTTATGAACCTAAGCCAGGTTGATCTCCAAGGTAACAACAGATTATGCGGCCTTAACTATCAAGTTATGCAAAAGTTGGGAGTCACTTTGTGTGTTGCAGGTAAAAAGAACAAGAGAAACAATTTGCTCCTTATCATACTACCGATTATAGGCGCGGCAGTTTTGTTCGTTTCAGTGCTTTCTTTGCTGTGGATGCTATATTCCTCTAAGACGGAAAAAAAGGAGGAGAAAAGAAGTTTGTCAAAATTGTCATCAACTCCTCTAAAGGGTTTGCCTCAAAATATATCCTACGATGATATTAGGCTTGCTACAAACAATTTTTCAGCTACAAACTTGGTTGGAAAAGGAGGCTTTGGTTCTGTTTACAAGGGAGTGTTCAACCTTAGCACTTACGAAAGTCAAACCACCACACTTGCTGTTAAAGTTTTTGACCTGCAACAAAGCAAAGCCTGCCAGAGTTTTAGTGCAGAATGTGAAACTTTGAAAAACGTTAGGCATCGGAATCTTGTCAAGGTGATCACTTCTTGTTCTAGTACTGATCACAAAGGGGATGATTTTAAGGCCCTTGTTATGCATTTCATTCCTAATGGTAATTTGGAGATGAGTTTATACCCAGAAGATCTCGAGTCGGGATCTTCACTAACCTTGTTGCAGAGGTTAAACATTGCTATTGATGTTGCATCTGCCCTGGACTACTTGCACCGTGATTGTGATCCACCAATAGTCCATTGTGATTTGAAACCACTCAATGTCCTACTAGATGAAAATATGGTTGCACATGTAGCCGATTTTGGATTGGCAAGGTTTCTCCCTCAAAATGCATCTGAGAAACGCAGTAGCACTCTAGAACTGAATGGATCAATCGGCTACATTGCCCCAGAATATGGTCTAGGAGGCAAGGCTTCAACTAGTGGTGATGTCTACAGTTTTGGGATCCTACTGCTAGAGATGTTGATAGCCAAAAAACCAACCGATGAAATGTTCAAAGAAGGATTAAACATGGACAACTTTGTATCAGAAATGGATGCAAAGCAATTACTGAATGTTGTTGATCAGAGGCTTATTAACCATTTTGAATATTCGATACAAAGTTTCAGCAGCGACAGTCATAGTGGTAGATCCGGCGACATCAGCTATAGTGATGGTAGTAAGACATACTGGACTCACAATGCGGAGGAGTGCATAGCTGCTGCAATGAGAATCGGCTTGTCATGTGTAGCACATCATCCCAAAGATAGGTTGACAATGAGAGAAGCCTTATCAAAATTGCATGGAATTAAGCAGTCTGTTCTTGACTTGTGA 3024 0.3902 MIHVHHILFLCFLLHNFHFIICITNNTDRDILLSFKLQLTDPNNVLSNWTTDSNHCTWYGVNCSKAGERVQSLTLSGLGLSGKLPSNLSNLTSLLSLNLSNNTFHGQIPFQFSHLTLLTVIQLARNNLSGTLPPQLGQLHNLQSLDFSVNNLTGEIPSTFGNLISLESLSMARNKFVGEIPIELANLRNLSTLQLSENNFSGKFPTSIFLNLSSLVFLSLTLNNLSGELPQNIGNALPNLTTLAIATNRFDGVIQNSISNSSHLQTIDLSNNRFHGPIPLFNNLKNLTILTLANNFLTSTTSLNLQFFDSLRNSTQLQILKVNYNNLTGELPNSVAYLSSNLQQFCVSNNQLNGSIPKGMNKFQNLTSFSFEWNNFTGEFPMELGTLKKLQQLWIHQNRLFGEIPDIFGNFTNLYQIAMRNNQFTGRIPASIGQCKSLNYLDLGMNRLVGVIPMEIFQLSGLRTLYLRGNSLNGSLPPVLNMEQLEVMIVSDNKLSGNISNIEANGLKVLQMARNKFSGSIPNSLGDSAFLETLDLSSNNLSGSIPENLEELKYLVSLNLSFNKLEGEVPMKGVFMNLSQVDLQGNNRLCGLNYQVMQKLGVTLCVAGKKNKRNNLLLIILPIIGAAVLFVSVLSLLWMLYSSKTEKKEEKRSLSKLSSTPLKGLPQNISYDDIRLATNNFSATNLVGKGGFGSVYKGVFNLSTYESQTTTLAVKVFDLQQSKACQSFSAECETLKNVRHRNLVKVITSCSSTDHKGDDFKALVMHFIPNGNLEMSLYPEDLESGSSLTLLQRLNIAIDVASALDYLHRDCDPPIVHCDLKPLNVLLDENMVAHVADFGLARFLPQNASEKRSSTLELNGSIGYIAPEYGLGGKASTSGDVYSFGILLLEMLIAKKPTDEMFKEGLNMDNFVSEMDAKQLLNVVDQRLINHFEYSIQSFSSDSHSGRSGDISYSDGSKTYWTHNAEECIAAAMRIGLSCVAHHPKDRLTMREALSKLHGIKQSVLDL 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02727 1007 SMART serkin_6 681 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02727 1007 Pfam Protein tyrosine and serine/threonine kinase 684 903 IPR001245 GO:0004672|GO:0006468
Vivi3g02727 1007 Gene3D Phosphorylase Kinase; domain 1 663 767 - -
Vivi3g02727 1007 Pfam Leucine rich repeat 413 472 IPR001611 GO:0005515
Vivi3g02727 1007 Gene3D Transferase(Phosphotransferase) domain 1 768 1005 - -
Vivi3g02727 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Vivi3g02727 1007 FunFam Inactive leucine-rich repeat receptor-like protein kinase 312 600 - -
Vivi3g02727 1007 SUPERFAMILY RNI-like 73 449 - -
Vivi3g02727 1007 SUPERFAMILY Protein kinase-like (PK-like) 655 997 IPR011009 -
Vivi3g02727 1007 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 64 311 - -
Vivi3g02727 1007 PANTHER LEUCINE RICH REPEAT KINASE 2 283 1001 - -
Vivi3g02727 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 768 1006 - -
Vivi3g02727 1007 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Vivi3g02727 1007 Gene3D Ribonuclease Inhibitor 281 599 IPR032675 -
Vivi3g02727 1007 FunFam LRR receptor-like serine/threonine-protein kinase EFR 652 767 - -
Vivi3g02727 1007 SMART LRR_typ_2 212 236 IPR003591 -
Vivi3g02727 1007 SMART LRR_typ_2 115 139 IPR003591 -
Vivi3g02727 1007 SMART LRR_typ_2 284 310 IPR003591 -
Vivi3g02727 1007 SMART LRR_typ_2 387 410 IPR003591 -
Vivi3g02727 1007 SMART LRR_typ_2 187 211 IPR003591 -
Vivi3g02727 1007 SMART LRR_typ_2 459 483 IPR003591 -
Vivi3g02727 1007 SMART LRR_typ_2 529 552 IPR003591 -
Vivi3g02727 1007 SMART LRR_typ_2 91 114 IPR003591 -
Vivi3g02727 1007 ProSiteProfiles Protein kinase domain profile. 681 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02727 1007 SUPERFAMILY L domain-like 383 593 - -
Vivi3g02727 1007 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Vivi3g02727 1007 SMART LRR_sd22_2 387 413 - -
Vivi3g02727 1007 SMART LRR_sd22_2 284 305 - -
Vivi3g02727 1007 SMART LRR_sd22_2 339 368 - -
Vivi3g02727 1007 SMART LRR_sd22_2 528 551 - -
Vivi3g02727 1007 SMART LRR_sd22_2 139 165 - -
Vivi3g02727 1007 SMART LRR_sd22_2 482 504 - -
Vivi3g02727 1007 ProSitePatterns Protein kinases ATP-binding region signature. 687 715 IPR017441 GO:0005524
Vivi3g02727 1007 Gene3D Ribonuclease Inhibitor 181 280 IPR032675 -
Vivi3g02727 1007 ProSiteProfiles Leucine-rich repeat profile. 530 553 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02727 Vivi-Chr3 45721498 45725019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02727 24 1002 Receptor kinase-like Gene Family AT3G47570 39.258 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi3g02727 PK_Tyr_Ser-Thr 3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02727 - - mtr:11428205 1508.43