Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02723 ATGAGTCCAAACGTTGTTGTTCCGAAACAACATAGTAAGGTTTTTGTGGGAGGATTGGCTTGGAAAACCCAAACAGACACACTGAAAAGCTATTTTGATCAGTTCGGTGAGATTCTTGAAGCTGTTGTCATCATTGACAGAACCACCGGAAAATCAAAAGGATATGGCTTTGTTACTTTCAAGGATCCAAATTCTGCTATAATAGCTTGCCAGAATCCTAATCCTGTCATTGATGGAAGAAGAACTAACTGTAATCTTGCATTGGCAAAATCTAATCCATCAACATCAACAGGAAGGAGGAATCTCAATAGTCCTTCATGGAACTATGCACCATTACAATTTTCAAGCTCCTATAATTATTACAATCAACATCTATCTCAATATGCATATCCTTATCCAGTTTATAGGTACTCGTACCCTGGTTATCTTCGTCCACACAACATTTATGACATGAACTATCCTAATGTATATGGTGGACCACAATTTCCAGTTCCTTTGTATCCACCATATTACCAACCATTTTATGGGCACAGTAAGCATTTAGTTCCAACATCATATGTGAAAAAGACTCAATTCCCTGGCCCTACTATTACTAGCAGCAGTGGAGCTGTCAAAGAAATAGTAGGTGCAACAAGAGTGGTGGAATCTCCCAAAGATCAAACATCTTCAAATTAA 675 0.3807 MSPNVVVPKQHSKVFVGGLAWKTQTDTLKSYFDQFGEILEAVVIIDRTTGKSKGYGFVTFKDPNSAIIACQNPNPVIDGRRTNCNLALAKSNPSTSTGRRNLNSPSWNYAPLQFSSSYNYYNQHLSQYAYPYPVYRYSYPGYLRPHNIYDMNYPNVYGGPQFPVPLYPPYYQPFYGHSKHLVPTSYVKKTQFPGPTITSSSGAVKEIVGATRVVESPKDQTSSN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02723 224 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Vivi3g02723 224 PANTHER BOULE-RELATED 12 195 - -
Vivi3g02723 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 89 IPR000504 GO:0003723
Vivi3g02723 224 SMART rrm1_1 13 85 IPR000504 GO:0003723
Vivi3g02723 224 Gene3D - 8 96 IPR012677 -
Vivi3g02723 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 72 IPR000504 GO:0003723
Vivi3g02723 224 CDD RRM_RBM24_RBM38_like 12 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02723 Vivi-Chr3 45569954 45571493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02723 14 105 C2H2 Transcription Factor Family AT2G19380 38.043 8.09e-15 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02723 3 45569954 45571493 Vivi3g02723 3 45569954 45571493 ECH